directoryPackageNowUpdate-ToTODOMAINTAINERMASTER_SITES (only the first one checked)
biology/azara azara 2.7->0.0mchittur@cs.nhttp://www.ccpn.ac.uk/download/azara/
biology/bcftoolsbcftools1.15->1.15.1baconhttps://github.com/samtools/
biology/beaglebeagle5.2->0.0pkgsrc-usershttps://faculty.washington.edu/browning/beagle/
biology/bioperlbioperl1.7.7->1.0070021.7.8pkgsrc-usershttps://cpan.perl.org/CPAN/modules/by-module/Bio/
biology/bodr bodr 9->0.0jihbed.researhttp://downloads.sourceforge.net/sourceforge/bodr/
biology/bowtie2bowtie22.4.4->2.4.5baconhttps://github.com/BenLangmead/
biology/canucanu1.8->2.22.1.1baconhttps://github.com/marbl/
biology/cdhitcdhit4.8.1->454.baconhttps://github.com/weizhongli/
biology/coordgenlibscoordgenlibs1.4.2->3.0.02.0.3bsiegerthttps://github.com/schrodinger/
biology/fastpfastp0.20.0->0.23.20.20.1baconhttps://github.com/OpenGene/
biology/fastqcfastqc0.11.9->0.0baconhttps://www.bioinformatics.babraham.ac.uk/projects/fastqc/
biology/filter-fastqfilter-fastq0.0.0.20210527->0.0pkgsrc-usershttps://github.com/stephenfloor/
biology/fluctuate fluctuate 1.4->0.0brook@nmsu.edhttp://evolution.gs.washington.edu/lamarc/fluctuate/
biology/gabeditgabedit2.4.8->0.0asau@inbox.ruhttp://downloads.sourceforge.net/sourceforge/gabedit/
biology/genesplicergenesplicer20030403->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/GeneSplicer/
biology/glimmerglimmer2.13->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/Glimmer/
biology/gnome-chemistry-utilsgnome-chemistry-utils0.14.16->0.14.17pkgsrc-usershttp://download-mirror.savannah.gnu.org/releases/gchemutils/0.14/
biology/gromacsgromacs4.5.5->2022.22021.1pkgsrc-usersftp://ftp.gromacs.org/pub/gromacs/
biology/hmmerhmmer3.0->3.13.1b2hdp@cs.nmsu.ehttp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/distfiles/
biology/htslibhtslib1.15.1->0.0baconhttps://github.com/samtools/htslib/releases/download/1.15.1/
biology/htslibhtslib1.15->0.0baconhttps://github.com/samtools/htslib/releases/download/1.15/
biology/igvigv2.9.2->0.0baconhttps://data.broadinstitute.org/igv/projects/downloads/2.9/
biology/lucylucy1.20->0.0dprice@cs.nmshttp://downloads.sourceforge.net/sourceforge/lucy/
biology/molsketchmolsketch0.7.2->0.0pinhttp://downloads.sourceforge.net/sourceforge/molsketch/
biology/mopacmopac7.0->0.0pkgsrc-usershttp://server.ccl.net/cca/software/LINUX/mopac7/
biology/mpqcmpqc2.3.1->0.0asau@inbox.ruhttp://downloads.sourceforge.net/sourceforge/mpqc/
biology/mummermummer3.20->0.0hdp@cs.nmsu.ehttp://downloads.sourceforge.net/sourceforge/mummer/
biology/ncbi-blast+ncbi-blast+2.13.0->0.0baconhttps://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
biology/nutnut15.8->0.020.1pkgsrc-usershttp://downloads.sourceforge.net/sourceforge/nut/
biology/pdbalign pdbalign 20030812->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/pdbalign/
biology/plinkseqplinkseq0.08->0.0baconhttps://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/
biology/primer3primer32.3.6->0.0pkgsrc-usershttp://downloads.sourceforge.net/sourceforge/primer3/
biology/profitprofit2.2->0.02.5.3hdp@cs.nmsu.ehttp://acrmwww.biochem.ucl.ac.uk/software/profit/235216/
biology/puzzlepuzzle5.2->5.3babafou@babafhttp://www.tree-puzzle.de/
biology/py-biopythonpy310-biopython1.79->0.0pkgsrc-usershttp://biopython.org/DIST/
biology/rasmolrasmol2.7.3->0.02.7.5.2pkgsrc-usershttp://www.bernstein-plus-sons.com/software/
biology/samtoolssamtools1.15->1.15.1baconhttps://github.com/samtools/
biology/stacksstacks2.60->2.62baconhttp://catchenlab.life.illinois.edu/stacks/source/
biology/stacksstacks2.60->2.61baconhttp://catchenlab.life.illinois.edu/stacks/source/
biology/stride stride 20030804->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/
biology/trimmomaticTrimmomatic0.38->0.39baconhttp://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/
biology/vsearchvsearch2.18.0->2.21.1baconhttps://github.com/torognes/