directory
Package
Now
Update-To
TODO
MAINTAINER
MASTER_SITES (only the first one checked)
biology/azara
azara
2.7
->
0.0
mchittur@cs.n
http://www.ccpn.ac.uk/download/azara/
biology/bcftools
bcftools
1.9
->
1.10.2
bacon
https://github.com/samtools/
biology/bodr
bodr
9
->
0.0
jihbed.resear
https://download.sourceforge.net/bodr
biology/canu
canu
1.8
->
1.9
bacon
https://github.com/marbl/
biology/cdhit
cdhit
4.6.4
->
454.
bacon
https://github.com/weizhongli/
biology/coalesce
coalesce
1.5.0.2
->
0.0
brook@nmsu.ed
http://evolution.genetics.washington.edu/lamarc/coalesce/
biology/fastDNAml
fastDNAml
1.2.2
->
0.0
babafou@babaf
http://geta.life.uiuc.edu/~gary/programs/fastDNAml/
biology/fluctuate
fluctuate
1.4
->
0.0
brook@nmsu.ed
http://evolution.gs.washington.edu/lamarc/fluctuate/
biology/gabedit
gabedit
2.4.8
->
2.50
asau@inbox.ru
https://download.sourceforge.net/gabedit
biology/genesplicer
genesplicer
20030403
->
0.0
hdp@cs.nmsu.e
ftp://ftp.tigr.org/pub/software/GeneSplicer/
biology/glimmer
glimmer
2.13
->
0.0
hdp@cs.nmsu.e
ftp://ftp.tigr.org/pub/software/Glimmer/
biology/gnome-chemistry-utils
gnome-chemistry-utils
0.12.13
->
0.12.13
0.14.11
pkgsrc-users
http://download-mirror.savannah.gnu.org/releases/gchemutils/
0.12/
biology/gromacs
gromacs
4.5.5
->
2019.5
5.1.2
pkgsrc-users
ftp://ftp.gromacs.org/pub/gromacs/
biology/hmmer
hmmer
3.0
->
3.1
hdp@cs.nmsu.e
http://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/distfiles/
biology/htslib
htslib
1.9
->
1.10.2
bacon
https://github.com/samtools/
biology/kallisto
kallisto
0.45.0
->
0.46.2
bacon
https://github.com/pachterlab/
biology/mopac
mopac
7.0
->
7.01-3
pkgsrc-users
http://server.ccl.net/cca/software/LINUX/
mopac7/
biology/mummer
mummer
3.20
->
3.23
hdp@cs.nmsu.e
https://download.sourceforge.net/mummer
biology/ncbi-blast+
ncbi-blast+
2.8.1
->
0.0
bacon
https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
biology/nut
nut
15.8
->
20.1
20.1
pkgsrc-users
https://download.sourceforge.net/nut
biology/nut
nut
15.8
->
0.0
20.1
pkgsrc-users
https://download.sourceforge.net/nut
biology/p5-Bio-ASN1-EntrezGene
p5-Bio-ASN1-EntrezGene
1.72
->
1.73
pkgsrc-users
https://cpan.perl.org/CPAN/modules/by-module/Bio/
biology/pdbalign
pdbalign
20030812
->
0.0
hdp@cs.nmsu.e
ftp://ftp.ebi.ac.uk/pub/software/unix/pdbalign/
biology/phylip
phylip
3.69
->
0.0
babafou@babaf
ftp://evolution.genetics.washington.edu/pub/phylip/
biology/plinkseq
plinkseq
0.08
->
0.0
bacon
https://atgu.mgh.harvard.edu/plinkseq/dist/
version-0.08/
biology/primer3
primer3
2.3.6
->
0.0
pkgsrc-users
https://download.sourceforge.net/primer3
biology/profit
profit
2.2
->
0.0
2.5.3
hdp@cs.nmsu.e
http://acrmwww.biochem.ucl.ac.uk/software/profit/
235216/
biology/puzzle
puzzle
5.2
->
5.3
babafou@babaf
http://www.tree-puzzle.de/
biology/py-biopython
py37-biopython
1.74
->
0.0
pkgsrc-users
http://biopython.org/DIST/
biology/py-pydicom
py37-pydicom
1.3.0
->
1.4.2
eborisch@gmai
https://github.com/pydicom/
biology/py-pydicom
py37-pydicom
1.3.0
->
1.4.1
eborisch@gmai
https://github.com/pydicom/
biology/rasmol
rasmol
2.7.3
->
0.0
2.7.5.2
pkgsrc-users
http://www.bernstein-plus-sons.com/software/
biology/samtools
samtools
1.9
->
1.10
bacon
https://github.com/samtools/
biology/sewer
sewer
2.6
->
0.0
hdp@cs.nmsu.e
ftp://iubio.bio.indiana.edu/molbio/analyze/
biology/stacks
stacks
2.2
->
2.5
bacon
http://catchenlab.life.illinois.edu/stacks/source/
biology/stride
stride
20030804
->
0.0
hdp@cs.nmsu.e
ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/
biology/trimmomatic
Trimmomatic
0.38
->
0.39
bacon
http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/
biology/vsearch
vsearch
2.13.4
->
2.14.2
bacon
https://github.com/torognes/