Summary  |  Upper directory |  diff  
       Script Time Stamp:    2016-05-15 03:38 UTC (hash: defdf92) 
       Started:              2020-02-15 18:31 UTC
       Ended:                2020-02-15 18:54 UTC
       Elapsed:                         00:23:35 
Found:                    21  These packages are to be updated
TODO flags:                4  (More to be updated, by TODO)
Up-to-date:               11  OK, Already up-to-date
Not Available:             4  Failed to get update info (indicated as 0.0)
No Master Sites:           0  (usually in files directory)
NotFound (404):            2  MASTER_SITES returns 404, and no recovery
Forbidden(403/550):        1  
Site not in DNS:           4  
Name ends with digit:      0  (The name ends with digits, may give false version)
Matured:                   0  (No update expected)
Texlive:                   0  (Texlive is skipped for now)
META_PACKAGE:              0  (Other than meta-pkgs category)
Confusing:                 2  (Found version wrong, hilighted, only for debug purpose)
Not Listed:                0  
Sum of Above:             49  

Total Checked:            51  
Options used:                 -R -f -m -p /tmp/pkgsrc -c biology -d /home/makoto/public_html/pkgsrc/check-update//.20200215-18 -S biology.html

 *** Above # has so many errors, by so many reasons, don't blame me :-) , thank you.


directoryPackageNow Update-ToTODOMAINTAINERMASTER_SITES (only the first one checked)
biology/azara azara (-1) 2.7 ->0.0mchittur@cs.nhttp://www.ccpn.ac.uk/download/azara/(404)
biology/bcftools bcftools 1.9 ->1.10.2baconhttps://github.com/samtools/
biology/bodr bodr (empty) 9 ->0.0jihbed.researhttps://download.sourceforge.net/bodr(0)
biology/canu canu 1.8 ->1.9baconhttps://github.com/marbl/
biology/cdhit cdhit (404) 4.6.4 ->454.baconhttps://github.com/weizhongli/
biology/coalesce coalesce (empty) 1.5.0.2 ->0.0brook@nmsu.edhttp://evolution.genetics.washington.edu/lamarc/coalesce/
biology/fastDNAml fastDNAml (none) 1.2.2 ->0.0babafou@babafhttp://geta.life.uiuc.edu/~gary/programs/fastDNAml/(DNS)
biology/fluctuate fluctuate (empty) 1.4 ->0.0brook@nmsu.edhttp://evolution.gs.washington.edu/lamarc/fluctuate/
biology/gabedit gabedit (DNS) 2.4.8 ->2.50asau@inbox.ruhttps://download.sourceforge.net/gabedit
biology/genesplicer genesplicer (550) 20030403 ->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/GeneSplicer/(550)
biology/glimmer glimmer (550) 2.13 ->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/Glimmer/(550)
biology/gnome-chemistry-utils gnome-chemistry-utils 0.12.13 ->0.12.130.14.11pkgsrc-usershttp://download-mirror.savannah.gnu.org/releases/gchemutils/0.12/
biology/gromacs gromacs 4.5.5 ->2019.55.1.2pkgsrc-usersftp://ftp.gromacs.org/pub/gromacs/
biology/hisat2 hisat2 2.1.0.23 ->2.1.0baconhttps://github.com/infphilo/
biology/hmmer hmmer 3.0 ->3.1hdp@cs.nmsu.ehttp://ftp-stud.fht-esslingen.de/pub/Mirrors/gentoo/distfiles/
biology/htslib htslib 1.9 ->1.10.2baconhttps://github.com/samtools/
biology/kallisto kallisto 0.45.0 ->0.46.2baconhttps://github.com/pachterlab/
biology/mopac mopac 7.0 ->7.01-3pkgsrc-usershttp://server.ccl.net/cca/software/LINUX/mopac7/
biology/mummer mummer (DNS) 3.20 ->3.23hdp@cs.nmsu.ehttps://download.sourceforge.net/mummer
biology/ncbi-blast+ ncbi-blast+ 2.8.1 ->0.0baconhttps://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/
biology/nut nut (DNS) 15.8 ->0.020.1pkgsrc-usershttps://download.sourceforge.net/nut(0)
biology/p5-Bio-ASN1-EntrezGene p5-Bio-ASN1-EntrezGene 1.72 ->1.73pkgsrc-usershttps://cpan.perl.org/CPAN/modules/by-module/Bio/
biology/pdbalign pdbalign (empty) 20030812 ->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/pdbalign/
biology/phylip phylip 3.69 ->0.0babafou@babafftp://evolution.genetics.washington.edu/pub/phylip/(none)
biology/plinkseq plinkseq 0.08 ->0.0baconhttps://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/(404)
biology/primer3 primer3 (DNS) 2.3.6 ->0.0pkgsrc-usershttps://download.sourceforge.net/primer3(0)
biology/profit profit 2.2 ->0.02.5.3hdp@cs.nmsu.ehttp://acrmwww.biochem.ucl.ac.uk/software/profit/235216/
biology/puzzle puzzle 5.2 ->5.3babafou@babafhttp://www.tree-puzzle.de/
biology/py-biopython py37-biopython 1.74 ->0.0pkgsrc-usershttp://biopython.org/DIST/
biology/py-mol py27-mol 1.5.0.1 ->net.stagin...pkgsrc-usershttps://download.sourceforge.net/pymol
biology/py-pydicom py37-pydicom 1.3.0 ->1.4.1eborisch@gmaihttps://github.com/pydicom/
biology/rasmol rasmol 2.7.3 ->0.02.7.5.2pkgsrc-usershttp://www.bernstein-plus-sons.com/software/
biology/samtools samtools 1.9 ->1.10baconhttps://github.com/samtools/
biology/sewer sewer (none) 2.6 ->0.0hdp@cs.nmsu.eftp://iubio.bio.indiana.edu/molbio/analyze/(none)
biology/stacks stacks 2.2 ->2.5baconhttp://catchenlab.life.illinois.edu/stacks/source/
biology/stride stride (empty) 20030804 ->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/
biology/trimmomatic Trimmomatic 0.38 ->0.39baconhttp://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/
biology/vsearch vsearch 2.13.4 ->2.14.2baconhttps://github.com/torognes/