Summary  |  Upper directory |  diff  
       Script Time Stamp:    2016-02-17 13:46 UTC 
       Started:              2016-02-17 23:59 UTC
       Ended:                2016-02-18 00:19 UTC
       Elapsed:                         00:20:17 
Found:                     9  These packages are to be updated
TODO flags:                1  (More to be updated, by TODO)
Up-to-date:               13  OK, Already up-to-date
Not Available:             3  Failed to get update info (indicated as 0.0)
No Master Sites:           0  (usually in files directory)
NotFound (404):            4  MASTER_SITES returns 404, and no recovery
Forbidden(403/550):        2  
Site not in DNS:           4  
Name ends with digit:      0  (The name ends with digits, may give false version)
Matured:                   0  (No update expected)
Texlive:                   0  (Texlive is skipped for now)
META_PACKAGE:              0  (Other than meta-pkgs category)
Confusing:                 1  (Found version wrong, hilighted, only for debug purpose)
Not Listed:                0  
Sum of Above:             37  

Total Checked:            37  
Options used:                 -f -m -p /tmp/pkgsrc -c biology -d /home/makoto/public_html/pkgsrc/check-update/.20160217-23 -S biology.html

 *** Above # has so many errors, by so many reasons, don't blame me :-) , thank you.


directoryPackageNow Update-ToTODOMAINTAINERMASTER_SITES (only the first one checked)
biology/azara azara (404) 2.7 ->0.0mchittur@cs.nhttp://www.ccpn.ac.uk/download/azara/(404)
biology/bodr bodr 9 ->10jihbed.researhttp://sourceforge.net/projects/bodr/files/
biology/bwa bwa 0.7.9a ->0.00.7.12jwbacon@tds.nhttp://sourceforge.net/projects/bio-bwa/files/bwa/(404)
biology/cdhit cdhit 4.6.4 ->454.jwbacon@tds.nhttps://github.com/weizhongli/
biology/coalesce coalesce 1.5.0.2 ->0.0brook@nmsu.edhttp://evolution.genetics.washington.edu/lamarc/coalesce/
biology/fluctuate fluctuate 1.4 ->0.0brook@nmsu.edhttp://evolution.gs.washington.edu/lamarc/fluctuate/
biology/gabedit gabedit 2.4.8 ->0.0asau@inbox.ruhttp://sourceforge.net/projects/gabedit/files/GabeditSrc/(404)
biology/genesplicer genesplicer (550) 20030403 ->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/GeneSplicer/(550)
biology/glimmer glimmer (550) 2.13 ->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/Glimmer/(550)
biology/gromacs gromacs 4.5.5 ->5.1.25.0.6pkgsrc-usersftp://ftp.gromacs.org/pub/gromacs/
biology/mopac mopac 7.0 ->7.01.3pkgsrc-usershttp://server.ccl.net/cca/software/LINUX/mopac7/
biology/mummer mummer 3.20 ->3.23hdp@cs.nmsu.ehttp://sourceforge.net/projects/MUMmer/files/
biology/nut nut 15.8 ->20.120.1pkgsrc-usershttp://sourceforge.net/projects/nut/files/nut/
biology/pdbalign pdbalign (empty) 20030812 ->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/pdbalign/(none)
biology/phylip phylip 3.69 ->0.0babafou@babafftp://evolution.genetics.washington.edu/pub/phylip/(none)
biology/plink plink 1.07 ->099p.jwbacon@tds.nhttp://pngu.mgh.harvard.edu/~purcell/plink/dist/
biology/plinkseq plinkseq 0.08 ->0.0jwbacon@tds.nhttp://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/
biology/primer3 primer3 2.3.6 ->0.0pkgsrc-usershttp://sourceforge.net/projects/primer3/files/primer3-src/(404)
biology/profit profit 2.2 ->3.12.5.3hdp@cs.nmsu.ehttp://acrmwww.biochem.ucl.ac.uk/software/profit/235216/
biology/py-mol py27-mol 1.5.0.1 ->0.0pkgsrc-usershttp://sourceforge.net/projects/pymol/files/pymol-v1.5.0.1/(404)
biology/rasmol rasmol 2.7.3 ->2.7.5.22.7.5.2pkgsrc-usershttp://www.bernstein-plus-sons.com/software/
biology/sewer sewer 2.6 ->0.0hdp@cs.nmsu.eftp://iubio.bio.indiana.edu/molbio/analyze/(none)
biology/stride stride (404) 20030804 ->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/(none)