Upper directory
       Script Time Stamp:   2015-01-12 06:41  UTC
       Started:             2015-01-12 07:14  UTC
       Ended:               2015-01-12 07:25  UTC
       Elapsed:                        00:11:31  
Found:                    8  These packages are to be updated
TODO flags                1  (More to be updated, by TODO)
Up-to-date:              13  OK, Already up-to-date
NotFound (404):           0  MASTER_SITES returns 404 (may be wrong observation, esp. SF.net)
Not Available:           10  Failed to get update info (indicated as 0.0)
No Master Sites:          0  (usually in files directory)
Forbidden(403/550):       0  
Skipped:                  1  (Skipped, the name ends with digits)
META_PACKAGE:             0  (Excluding meta-pkgs directory)
Confusing:                1  (Found version wrong, hilighted, only for debug purpose)
Not Listed:               0  
Sum of Above:            34  

Total Checked:           34  
Options used:                -u -c biology -S biology.5.html
Output URL:                  http://www.ki.nu/~makoto/pkgsrc/check-update/biology.5.html
directoryPackageNow Update-ToTODOMAINTAINERMASTER_SITES (only the first one checked)
biology/azara azara 2.7 ->0.0mchittur@cs.nhttp://www.ccpn.ac.uk/download/azara/
biology/bodr bodr 9 ->10jihbed.researhttp://downloads.sourceforge.net/sourceforge/bodr/
biology/coalesce coalesce 1.5.0.2 ->1.5bbrook@nmsu.edhttp://evolution.genetics.washington.edu/lamarc/coalesce/
biology/fluctuate fluctuate 1.4 ->0.0brook@nmsu.edhttp://evolution.gs.washington.edu/lamarc/fluctuate/
biology/genesplicer genesplicer 20030403 ->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/GeneSplicer/
biology/glimmer glimmer 2.13 ->0.0hdp@cs.nmsu.eftp://ftp.tigr.org/pub/software/Glimmer/
biology/gromacs gromacs 4.5.5 ->5.02pkgsrc-usersftp://ftp.gromacs.org/pub/gromacs/
biology/mopac mopac 7.0 ->7.01.3pkgsrc-usershttp://server.ccl.net/cca/software/LINUX/mopac7/
biology/mummer mummer 3.20 ->3.23hdp@cs.nmsu.ehttp://downloads.sourceforge.net/sourceforge/mummer/
biology/nut nut 15.8 ->0.019.2pkgsrc-usershttp://downloads.sourceforge.net/sourceforge/nut/
biology/pdbalign pdbalign 20030812 ->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/pdbalign/
biology/phylip phylip 3.69 ->0.0babafou@babafftp://evolution.genetics.washington.edu/pub/phylip/
biology/plink plink 1.07 ->099p.tmpjwbacon@tds.nhttp://pngu.mgh.harvard.edu/~purcell/plink/dist/
biology/plinkseq plinkseq 0.08 ->0.0jwbacon@tds.nhttp://atgu.mgh.harvard.edu/plinkseq/dist/version-0.08/
biology/profit profit 2.2 ->3.12.5.3hdp@cs.nmsu.ehttp://acrmwww.biochem.ucl.ac.uk/software/profit/235216/
biology/py-mol py27-mol 1.5.0.1 ->1.7.4.0pkgsrc-usershttp://downloads.sourceforge.net/sourceforge/pymol/
biology/rasmol rasmol 2.7.3 ->0.0pkgsrc-usershttp://www.bernstein-plus-sons.com/software/
biology/sewer sewer 2.6 ->0.0hdp@cs.nmsu.eftp://iubio.bio.indiana.edu/molbio/analyze/
biology/stride stride 20030804 ->0.0hdp@cs.nmsu.eftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/