=> Bootstrap dependency digest>=20010302: found digest-20190127 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. => Checksum SHA1 OK for ScientificPython-2.8.1.tar.gz => Checksum RMD160 OK for ScientificPython-2.8.1.tar.gz => Checksum SHA512 OK for ScientificPython-2.8.1.tar.gz ===> Installing dependencies for py37-Scientific-2.8.1nb12 ========================================================================== The following variables will affect the build process of this package, py37-Scientific-2.8.1nb12. Their current value is shown below: * KRB5_DEFAULT = heimdal * PYTHON_VERSION_DEFAULT = 37 * SSLBASE = /usr * SSLCERTS = /etc/openssl/certs * SSLDIR = /etc/openssl * SSLKEYS = /etc/openssl/private Based on these variables, the following variables have been set: * KRB5BASE (defined, but empty) * KRB5_TYPE = heimdal * PYPACKAGE = python37 You may want to abort the process now with CTRL-C and change their value before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency python37>=3.7.0: found python37-3.7.4 => Full dependency netcdf>=4.6.1nb5: found netcdf-4.6.1nb5 => Full dependency py37-numpy>=1.0: found py37-numpy-1.16.4 => Full dependency mpich>=3: found mpich-3.2.1nb1 ===> Overriding tools for py37-Scientific-2.8.1nb12 ===> Extracting for py37-Scientific-2.8.1nb12 ===> Patching for py37-Scientific-2.8.1nb12 => Applying pkgsrc patches for py37-Scientific-2.8.1nb12 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-Scientific/patches/patch-aa => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-Scientific/patches/patch-aa Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-aa,v 1.4 2010/05/29 03:18:54 obache Exp $ | |--- setup.py.orig 2008-10-28 13:31:44.000000000 +0000 |+++ setup.py -------------------------- Patching file setup.py using Plan A... Hunk #1 succeeded at 108 (offset -5 lines). done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-Scientific/patches/patch-ab => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-Scientific/patches/patch-ab Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ab,v 1.4 2015/09/23 12:00:11 joerg Exp $ | |* Fixed NumPy as numeric package for user-destdir installation. |* Honor CFLAGS and LDFLAGS. | |--- Src/MPI/compile.py.orig 2008-10-28 20:24:44.000000000 +0000 |+++ Src/MPI/compile.py -------------------------- Patching file Src/MPI/compile.py using Plan A... Hunk #1 succeeded at 5. Hunk #2 succeeded at 12. Hunk #3 succeeded at 39. done ===> Creating toolchain wrappers for py37-Scientific-2.8.1nb12 ===> Configuring for py37-Scientific-2.8.1nb12 => Checking for portability problems in extracted files