=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-nimble-1.3.0
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'nimble' ...
** this is package 'nimble' version '1.3.0'
** package 'nimble' successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether c++ -std=gnu++17 accepts -g... yes
checking for c++ -std=gnu++17 option to enable C++11 features... none needed
working on eigen
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for Eigen/Dense... no
Using the version of Eigen provided with NIMBLE
ENABLE_LIB=false
configure: creating ./config.status
config.status: creating inst/make/Makevars
config.status: creating inst/make/Makevars_lib
config.status: creating R/config.R
config.status: creating src/Makevars
config.status: creating inst/CppCode/Makevars
removing debugging flags
/usr/pkg/lib/R/bin/Rscript --vanilla ./customizeMakeconf.R
Building libnimble.a
c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG -DR_NO_REMAP -I"../include"   -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2    -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2   -c nimOptim.cpp -o nimOptim.o
In file included from ../include/Eigen/Core:205:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i {aka __vector(2) long long int}' [-Wignored-attributes]
 typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
                                        ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i {aka __vector(2) long long int}' [-Wignored-attributes]
 typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
                                        ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128 {aka __vector(4) float}' [-Wignored-attributes]
 template<> struct is_arithmetic<__m128>  { enum { value = true }; };
                                       ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i {aka __vector(2) long long int}' [-Wignored-attributes]
 template<> struct is_arithmetic<__m128i> { enum { value = true }; };
                                        ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d {aka __vector(2) double}' [-Wignored-attributes]
 template<> struct is_arithmetic<__m128d> { enum { value = true }; };
                                        ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f {aka __vector(4) float}' [-Wignored-attributes]
 template<> struct unpacket_traits<Packet4f> {
                                           ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d {aka __vector(2) double}' [-Wignored-attributes]
 template<> struct unpacket_traits<Packet2d> {
                                           ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f {aka __vector(4) float}' [-Wignored-attributes]
 ptranspose(PacketBlock<Packet4f,4>& kernel) {
                                  ^
../include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d {aka __vector(2) double}' [-Wignored-attributes]
 ptranspose(PacketBlock<Packet2d,2>& kernel) {
                                  ^
In file included from ../include/Eigen/Core:174:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f {aka __vector(4) float}' [-Wignored-attributes]
   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
                                                            ^
../include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f {aka __vector(4) float}' [-Wignored-attributes]
   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
                                                            ^
../include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d {aka __vector(2) double}' [-Wignored-attributes]
   struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> {          \
                                                            ^
../include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d {aka __vector(2) double}' [-Wignored-attributes]
   struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> {          \
                                                            ^
../include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
 EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/nimble/Utils.h:27:0,
                 from ../include/nimble/NimArr.h:27,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/nimble/accessorClasses.h: In member function 'void NodeVectorClassNew_derivs::populateDerivsInfo(SEXP)':
../include/nimble/accessorClasses.h:936:6: error: 'Rf_findVarInFrame' was not declared in this scope
      Rf_findVarInFrame(PROTECT(GET_SLOT(SderivsInfo, SpxData)),
      ^
/tmp/math/R-nimble/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
../include/nimble/accessorClasses.h:936:6: note: suggested alternative: 'R_existsVarInFrame'
      Rf_findVarInFrame(PROTECT(GET_SLOT(SderivsInfo, SpxData)),
      ^
/tmp/math/R-nimble/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
In file included from ../include/Eigen/Core:165:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
../include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
../include/Eigen/src/Geometry/Quaternion.h:265:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
../include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46:   required from here
../include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type {aka __vector(4) float}' [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type {aka __vector(4) float}' [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type {aka __vector(4) float}' [-Wignored-attributes]
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half {aka __vector(4) float}' [-Wignored-attributes]
../include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type {aka __vector(4) float}' [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from ../include/Eigen/Core:271:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
../include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
../include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<float, 4, 1>'
../include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
../include/Eigen/src/Geometry/Quaternion.h:273:7:   required from 'class Eigen::Quaternion<float>'
../include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type {aka __vector(4) float}' [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from ../include/Eigen/Core:165:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
../include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
../include/Eigen/src/Geometry/Quaternion.h:265:7:   required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
../include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47:   required from here
../include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from ../include/Eigen/Core:271:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
../include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
../include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 4, 1>'
../include/Eigen/src/Geometry/Quaternion.h:46:50:   required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
../include/Eigen/src/Geometry/Quaternion.h:273:7:   required from 'class Eigen::Quaternion<double>'
../include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
In file included from ../include/Eigen/Core:165:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
../include/Eigen/src/Core/Matrix.h:22:57:   required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, -1>'
../include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:81:10:   required from 'class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >'
../include/nimble/EigenTypedefs.h:146:24:   required from here
../include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
          bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
                      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
   typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
                                                                                        ^~~~
In file included from ../include/Eigen/Core:271:0,
                 from ../include/nimble/NimArrBase.h:33,
                 from ../include/nimble/NimArr.h:26,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1>, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, -1>'
../include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:81:10:   required from 'class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >'
../include/nimble/EigenTypedefs.h:146:24:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
                      >::type PacketReturnType;
                              ^~~~~~~~~~~~~~~~
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>, 2>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0> >'
../include/Eigen/src/Core/Diagonal.h:63:53:   required from 'class Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, 0>'
../include/Eigen/src/Eigenvalues/Tridiagonalization.h:92:21:   required from 'class Eigen::Tridiagonalization<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:111:62:   required from 'class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >'
../include/nimble/EigenTypedefs.h:146:24:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:481:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>, 2>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1> >'
../include/Eigen/src/Core/Diagonal.h:63:53:   required from 'class Eigen::Diagonal<const Eigen::Matrix<double, -1, -1>, -1>'
../include/Eigen/src/Eigenvalues/Tridiagonalization.h:97:21:   required from 'class Eigen::Tridiagonalization<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:111:62:   required from 'class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >'
../include/nimble/EigenTypedefs.h:146:24:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
../include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
../include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, -1, 1>'
../include/Eigen/src/Eigenvalues/Tridiagonalization.h:100:128:   required from 'class Eigen::Tridiagonalization<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h:111:62:   required from 'class Eigen::SelfAdjointEigenSolver<Eigen::Matrix<double, -1, -1> >'
../include/nimble/EigenTypedefs.h:146:24:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >'
../include/Eigen/src/Core/PlainObjectBase.h:98:7:   required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >'
../include/Eigen/src/Core/Matrix.h:178:7:   required from 'class Eigen::Matrix<double, 1, -1>'
../include/Eigen/src/Eigenvalues/./HessenbergDecomposition.h:277:16:   required from 'class Eigen::HessenbergDecomposition<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Eigenvalues/RealSchur.h:230:41:   required from 'class Eigen::RealSchur<Eigen::Matrix<double, -1, -1> >'
../include/Eigen/src/Eigenvalues/EigenSolver.h:316:27:   required from 'class Eigen::EigenSolver<Eigen::Matrix<double, -1, -1> >'
../include/nimble/EigenTypedefs.h:156:47:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_real_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> >, 0>':
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_real_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> > >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_real_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> > >'
../include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_real_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1>, Eigen::Dense>'
../include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_real_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> >'
../include/nimble/EigenTypedefs.h:156:70:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_imag_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> >, 0>':
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_imag_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> > >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_imag_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> > >'
../include/Eigen/src/Core/CwiseUnaryOp.h:94:7:   required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_imag_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1>, Eigen::Dense>'
../include/Eigen/src/Core/CwiseUnaryOp.h:55:7:   required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_imag_op<std::complex<double> >, const Eigen::Matrix<std::complex<double>, -1, 1> >'
../include/nimble/EigenTypedefs.h:161:57:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1> >, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1> >, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::Map<Eigen::Matrix<double, -1, 1> >, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::Map<Eigen::Matrix<double, -1, 1> > >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::Map<Eigen::Matrix<double, -1, 1> > >'
../include/Eigen/src/Core/MapBase.h:37:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1> >, 0>'
../include/Eigen/src/Core/MapBase.h:223:34:   required from 'class Eigen::MapBase<Eigen::Map<Eigen::Matrix<double, -1, 1> >, 1>'
../include/Eigen/src/Core/Map.h:94:79:   required from 'class Eigen::Map<Eigen::Matrix<double, -1, 1> >'
../include/nimble/EigenTypedefs.h:163:18:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> > >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> > >'
../include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from 'class Eigen::CwiseUnaryViewImpl<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1>, Eigen::Dense>'
../include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from 'class Eigen::CwiseUnaryView<Eigen::internal::scalar_real_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >'
../include/nimble/EigenTypedefs.h:173:58:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
../include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >, 0>':
../include/Eigen/src/Core/DenseCoeffsBase.h:302:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >, 1>'
../include/Eigen/src/Core/DenseCoeffsBase.h:555:7:   required from 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >, 3>'
../include/Eigen/src/Core/DenseBase.h:41:34:   required from 'class Eigen::DenseBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> > >'
../include/Eigen/src/Core/MatrixBase.h:48:34:   required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryView<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> > >'
../include/Eigen/src/Core/CwiseUnaryView.h:103:7:   required from 'class Eigen::CwiseUnaryViewImpl<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1>, Eigen::Dense>'
../include/Eigen/src/Core/CwiseUnaryView.h:58:7:   required from 'class Eigen::CwiseUnaryView<Eigen::internal::scalar_imag_ref_op<std::complex<double> >, Eigen::Matrix<std::complex<double>, -1, -1> >'
../include/nimble/EigenTypedefs.h:175:63:   required from here
../include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type {aka __vector(2) double}' [-Wignored-attributes]
In file included from ../include/nimble/Utils.h:27:0,
                 from ../include/nimble/NimArr.h:27,
                 from ../include/nimble/nimOptim.h:25,
                 from nimOptim.cpp:23:
nimOptim.cpp: In member function 'nimSmartPtr<OptimResultNimbleList> NimOptimProblem::solve(NimArr<1, double>&)':
nimOptim.cpp:292:41: error: 'Rf_findVar' was not declared in this scope
                 PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"),
                                         ^
/tmp/math/R-nimble/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
nimOptim.cpp:292:33: note: in expansion of macro 'PROTECT'
                 PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"),
                                 ^
nimOptim.cpp:292:41: note: suggested alternative: 'Rf_findFun'
                 PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"),
                                         ^
/tmp/math/R-nimble/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
nimOptim.cpp:292:33: note: in expansion of macro 'PROTECT'
                 PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"),
                                 ^
make: *** [Makeconf:197: nimOptim.o] Error 1
rm -f Makeconf
** libs
using C++ compiler: 'g++ (nb4 20200810) 7.5.0'
c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG -DR_NO_REMAP -I../inst/include    -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2    -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2   -c RcppUtils.cpp -o RcppUtils.o
In file included from ../inst/include/nimble/Utils.h:27:0,
                 from ../inst/include/nimble/RcppUtils.h:31,
                 from RcppUtils.cpp:22:
RcppUtils.cpp: In function 'SEXPREC* makeNewNimbleList(SEXP)':
RcppUtils.cpp:906:29: error: 'Rf_findVar' was not declared in this scope
     PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"), R_GlobalEnv)), R_GlobalEnv));
                             ^
/tmp/math/R-nimble/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
RcppUtils.cpp:906:21: note: in expansion of macro 'PROTECT'
     PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"), R_GlobalEnv)), R_GlobalEnv));
                     ^~~~~~~
RcppUtils.cpp:906:29: note: suggested alternative: 'Rf_findFun'
     PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"), R_GlobalEnv)), R_GlobalEnv));
                             ^
/tmp/math/R-nimble/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT'
 #define PROTECT(s) Rf_protect(s)
                               ^
RcppUtils.cpp:906:21: note: in expansion of macro 'PROTECT'
     PROTECT(Rf_eval(PROTECT(Rf_findVar(Rf_install("nimbleInternalFunctions"), R_GlobalEnv)), R_GlobalEnv));
                     ^~~~~~~
make: *** [/usr/pkg/lib/R/etc/Makeconf:197: RcppUtils.o] Error 1
ERROR: compilation failed for package 'nimble'
* removing '/tmp/math/R-nimble/work/.destdir/usr/pkg/lib/R/library/nimble'
*** Error code 1

Stop.
make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-nimble
*** Error code 1

Stop.
make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-nimble