=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-xml2-1.3.6nb6 => Generating pre-install file lists => Creating installation directories * installing *source* package 'xml2' ... ** this is package 'xml2' version '1.3.6' ** package 'xml2' successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/pkg/include/libxml2 Using PKG_LIBS=-Wl,-R/usr/pkg/lib -L/usr/pkg/lib -lxml2 -lpthread -L/usr/lib -lz -lm ** libs using C compiler: 'gcc (nb4 20200810) 7.5.0' using C++ compiler: 'g++ (nb4 20200810) 7.5.0' c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include -I/usr/pkg/include/libxml2 -DUCHAR_TYPE=wchar_t -DU_SHOW_CPLUSPLUS_API=0 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fvisibility=hidden -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c connection.cpp -o connection.o In file included from connection.cpp:7:0: xml2_utils.h: In function 'const NodeType getNodeType(SEXP)': xml2_utils.h:31:7: error: 'IS_S4_OBJECT' was not declared in this scope if (IS_S4_OBJECT(x)) { ^~~~~~~~~~~~ *** Error code 1 Stop. make: stopped in /tmp/textproc/R-xml2/work/xml2/src ERROR: compilation failed for package 'xml2' * removing '/tmp/textproc/R-xml2/work/.destdir/usr/pkg/lib/R/library/xml2' *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/textproc/R-xml2 *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/textproc/R-xml2