=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-gsl-2.1.8 => Generating pre-install file lists => Creating installation directories * installing *source* package 'gsl' ... ** this is package 'gsl' version '2.1-8' ** package 'gsl' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for gsl-config... /usr/pkg/bin/gsl-config checking if GSL version >= 2.5... yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: 'gcc (nb4 20200810) 7.5.0' gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c airy.c -o airy.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c bessel.c -o bessel.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c clausen.c -o clausen.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c coulomb.c -o coulomb.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c coupling.c -o coupling.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c dawson.c -o dawson.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c debye.c -o debye.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c dilog.c -o dilog.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c ellint.c -o ellint.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c elljac.c -o elljac.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c error.c -o error.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c expint.c -o expint.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c fermi_dirac.c -o fermi_dirac.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c gamma.c -o gamma.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c gegenbauer.c -o gegenbauer.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c hyperg.c -o hyperg.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c init.c -o init.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c laguerre.c -o laguerre.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c lambert.c -o lambert.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c legendre.c -o legendre.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c log.c -o log.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c poly.c -o poly.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c pow_int.c -o pow_int.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c psi.c -o psi.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c qrng.c -o qrng.o qrng.c: In function 'cleanup': qrng.c:13:27: warning: implicit declaration of function 'EXTPTR_PTR'; did you mean 'EXTPTRSXP'? [-Wimplicit-function-declaration] gsl_qrng_free((gsl_qrng*)EXTPTR_PTR(r)); ^~~~~~~~~~ EXTPTRSXP qrng.c:13:16: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gsl_qrng_free((gsl_qrng*)EXTPTR_PTR(r)); ^ qrng.c: In function 'qrng_clone': qrng.c:43:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ In file included from /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rdefines.h:41:0, from qrng.c:3: qrng.c:46:26: warning: implicit declaration of function 'EXTPTR_TAG'; did you mean 'EXTPTRSXP'? [-Wimplicit-function-declaration] PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); ^ /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ qrng.c:46:26: warning: passing argument 1 of 'Rf_duplicate' makes pointer from integer without a cast [-Wint-conversion] PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); ^ /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:489:6: note: expected 'SEXP {aka struct SEXPREC *}' but argument is of type 'int' SEXP Rf_duplicate(SEXP); ^~~~~~~~~~~~ qrng.c: In function 'qrng_init': qrng.c:56:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ qrng.c: In function 'qrng_name': qrng.c:66:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ qrng.c: In function 'qrng_size': qrng.c:75:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ qrng.c: In function 'qrng_state': qrng.c:85:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ qrng.c: In function 'qrng_get': qrng.c:98:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ qrng.c:101:18: warning: passing argument 1 of 'Rf_asInteger' makes pointer from integer without a cast [-Wint-conversion] dim = asInteger(EXTPTR_TAG(r)); ^~~~~~~~~~ In file included from /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rdefines.h:41:0, from qrng.c:3: /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:452:5: note: expected 'SEXP {aka struct SEXPREC *}' but argument is of type 'int' int Rf_asInteger(SEXP x); ^~~~~~~~~~~~ qrng.c: In function 'get_n': qrng.c:116:40: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(r) != EXTPTRSXP || !(gen = (gsl_qrng*)EXTPTR_PTR(r))) ^ qrng.c:119:18: warning: passing argument 1 of 'Rf_asInteger' makes pointer from integer without a cast [-Wint-conversion] dim = asInteger(EXTPTR_TAG(r)); ^~~~~~~~~~ In file included from /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rdefines.h:41:0, from qrng.c:3: /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:452:5: note: expected 'SEXP {aka struct SEXPREC *}' but argument is of type 'int' int Rf_asInteger(SEXP x); ^~~~~~~~~~~~ gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c rng.c -o rng.o rng.c: In function 'rng_cleanup': rng.c:8:25: warning: implicit declaration of function 'EXTPTR_PTR'; did you mean 'EXTPTRSXP'? [-Wimplicit-function-declaration] gsl_rng_free((gsl_rng*)EXTPTR_PTR(r)); ^~~~~~~~~~ EXTPTRSXP rng.c:8:15: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] gsl_rng_free((gsl_rng*)EXTPTR_PTR(r)); ^ rng.c: In function 'get_rng_from_sexp': rng.c:13:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] if (TYPEOF(rng) != EXTPTRSXP || !(gen = (gsl_rng*)EXTPTR_PTR(rng))) { ^ In file included from /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rdefines.h:41:0, from rng.c:5: rng.c: In function 'rng_clone': rng.c:99:26: warning: implicit declaration of function 'EXTPTR_TAG'; did you mean 'EXTPTRSXP'? [-Wimplicit-function-declaration] PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); ^ /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ rng.c:99:26: warning: passing argument 1 of 'Rf_duplicate' makes pointer from integer without a cast [-Wint-conversion] PROTECT(duplicate(EXTPTR_TAG(r))), R_NilValue); ^ /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:357:31: note: in definition of macro 'PROTECT' #define PROTECT(s) Rf_protect(s) ^ /tmp/math/R-gsl/work/.buildlink/lib/R/include/Rinternals.h:489:6: note: expected 'SEXP {aka struct SEXPREC *}' but argument is of type 'int' SEXP Rf_duplicate(SEXP); ^~~~~~~~~~~~ gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c synchrotron.c -o synchrotron.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c transport.c -o transport.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c trig.c -o trig.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c vector.c -o vector.o gcc -I"/usr/pkg/lib/R/include" -DNDEBUG -I/usr/pkg/include -I. -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c zeta.c -o zeta.o gcc -shared -L/usr/pkg/lib/R/lib -Wl,-R/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -o gsl.so airy.o bessel.o clausen.o coulomb.o coupling.o dawson.o debye.o dilog.o ellint.o elljac.o error.o expint.o fermi_dirac.o gamma.o gegenbauer.o hyperg.o init.o laguerre.o lambert.o legendre.o log.o poly.o pow_int.o psi.o qrng.o rng.o synchrotron.o transport.o trig.o vector.o zeta.o -Wl,-R/usr/pkg/lib -L/usr/pkg/lib -lgsl -lgslcblas -lm -L/usr/pkg/lib/R/lib installing to /tmp/math/R-gsl/work/.destdir/usr/pkg/lib/R/library/00LOCK-gsl/00new/gsl/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Error: package or namespace load failed for 'gsl' in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/tmp/math/R-gsl/work/.destdir/usr/pkg/lib/R/library/00LOCK-gsl/00new/gsl/libs/gsl.so': /tmp/math/R-gsl/work/.destdir/usr/pkg/lib/R/library/00LOCK-gsl/00new/gsl/libs/gsl.so: Undefined PLT symbol "EXTPTR_PTR" (symnum = 95) Error: loading failed Execution halted ERROR: loading failed * removing '/tmp/math/R-gsl/work/.destdir/usr/pkg/lib/R/library/gsl' *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-gsl *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-gsl