=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-fastmatch-1.1.6
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'fastmatch' ...
** this is package 'fastmatch' version '1.1-6'
** package 'fastmatch' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc (nb4 20200810) 7.5.0'
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2    -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2  -c ctapply.c -o ctapply.o
ctapply.c: In function 'ctapply_':
ctapply.c:42:6: warning: implicit declaration of function 'SET_NAMED'; did you mean 'SET_TAG'? [-Wimplicit-function-declaration]
      SET_NAMED(cdi = SET_VECTOR_ELT(tmp, 0, allocVector(TYPEOF(by), (cdlen = ((N < MIN_CACHE) ? MIN_CACHE : N)))), 1);
      ^~~~~~~~~
      SET_TAG
ctapply.c:48:2: warning: implicit declaration of function 'SETLENGTH'; did you mean 'XLENGTH'? [-Wimplicit-function-declaration]
  SETLENGTH(cdi, N);
  ^~~~~~~~~
  XLENGTH
In file included from /usr/include/ssp/strings.h:34:0,
                 from /usr/include/strings.h:72,
                 from /usr/include/string.h:98,
                 from ctapply.c:2:
ctapply.c:53:40: warning: implicit declaration of function 'STRING_PTR'; did you mean 'STRING_ELT'? [-Wimplicit-function-declaration]
  else if (TYPEOF(by) == STRSXP) memcpy(STRING_PTR(cdi), STRING_PTR(by) + i0, sizeof(SEXP) * N);
                                        ^
ctapply.c:53:40: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
ctapply.c:53:40: note: expected 'const void *' but argument is of type 'int'
ctapply.c:53:40: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(by) == STRSXP) memcpy(STRING_PTR(cdi), STRING_PTR(by) + i0, sizeof(SEXP) * N);
                                        ^
ctapply.c:53:40: note: expected 'const void *' but argument is of type 'int'
In file included from /usr/include/string.h:127:0,
                 from ctapply.c:2:
ctapply.c:53:40: warning: passing argument 1 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(by) == STRSXP) memcpy(STRING_PTR(cdi), STRING_PTR(by) + i0, sizeof(SEXP) * N);
                                        ^
ctapply.c:53:40: note: expected 'void *' but argument is of type 'int'
ctapply.c:53:57: warning: passing argument 2 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(by) == STRSXP) memcpy(STRING_PTR(cdi), STRING_PTR(by) + i0, sizeof(SEXP) * N);
                                                         ^
ctapply.c:53:57: note: expected 'const void *' but argument is of type 'int'
ctapply.c:53:40: warning: passing argument 1 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(by) == STRSXP) memcpy(STRING_PTR(cdi), STRING_PTR(by) + i0, sizeof(SEXP) * N);
                                        ^
/usr/include/ssp/string.h:82:1: note: expected 'void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
ctapply.c:53:57: warning: passing argument 2 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(by) == STRSXP) memcpy(STRING_PTR(cdi), STRING_PTR(by) + i0, sizeof(SEXP) * N);
                                                         ^
/usr/include/ssp/string.h:82:1: note: expected 'const void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
In file included from /usr/include/ssp/strings.h:34:0,
                 from /usr/include/strings.h:72,
                 from /usr/include/string.h:98,
                 from ctapply.c:2:
ctapply.c:57:41: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == STRSXP) memcpy(STRING_PTR(cdv), STRING_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
ctapply.c:57:41: note: expected 'const void *' but argument is of type 'int'
ctapply.c:57:41: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == STRSXP) memcpy(STRING_PTR(cdv), STRING_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
ctapply.c:57:41: note: expected 'const void *' but argument is of type 'int'
In file included from /usr/include/string.h:127:0,
                 from ctapply.c:2:
ctapply.c:57:41: warning: passing argument 1 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == STRSXP) memcpy(STRING_PTR(cdv), STRING_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
ctapply.c:57:41: note: expected 'void *' but argument is of type 'int'
ctapply.c:57:58: warning: passing argument 2 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == STRSXP) memcpy(STRING_PTR(cdv), STRING_PTR(vec) + i0, sizeof(SEXP) * N);
                                                          ^
ctapply.c:57:58: note: expected 'const void *' but argument is of type 'int'
ctapply.c:57:41: warning: passing argument 1 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == STRSXP) memcpy(STRING_PTR(cdv), STRING_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
/usr/include/ssp/string.h:82:1: note: expected 'void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
ctapply.c:57:58: warning: passing argument 2 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == STRSXP) memcpy(STRING_PTR(cdv), STRING_PTR(vec) + i0, sizeof(SEXP) * N);
                                                          ^
/usr/include/ssp/string.h:82:1: note: expected 'const void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
In file included from /usr/include/ssp/strings.h:34:0,
                 from /usr/include/strings.h:72,
                 from /usr/include/string.h:98,
                 from ctapply.c:2:
ctapply.c:58:41: warning: implicit declaration of function 'VECTOR_PTR'; did you mean 'VECTOR_PTR_RO'? [-Wimplicit-function-declaration]
  else if (TYPEOF(vec) == VECSXP) memcpy(VECTOR_PTR(cdv), VECTOR_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
ctapply.c:58:41: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
ctapply.c:58:41: note: expected 'const void *' but argument is of type 'int'
ctapply.c:58:41: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == VECSXP) memcpy(VECTOR_PTR(cdv), VECTOR_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
ctapply.c:58:41: note: expected 'const void *' but argument is of type 'int'
In file included from /usr/include/string.h:127:0,
                 from ctapply.c:2:
ctapply.c:58:41: warning: passing argument 1 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == VECSXP) memcpy(VECTOR_PTR(cdv), VECTOR_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
ctapply.c:58:41: note: expected 'void *' but argument is of type 'int'
ctapply.c:58:58: warning: passing argument 2 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == VECSXP) memcpy(VECTOR_PTR(cdv), VECTOR_PTR(vec) + i0, sizeof(SEXP) * N);
                                                          ^
ctapply.c:58:58: note: expected 'const void *' but argument is of type 'int'
ctapply.c:58:41: warning: passing argument 1 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == VECSXP) memcpy(VECTOR_PTR(cdv), VECTOR_PTR(vec) + i0, sizeof(SEXP) * N);
                                         ^
/usr/include/ssp/string.h:82:1: note: expected 'void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
ctapply.c:58:58: warning: passing argument 2 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
  else if (TYPEOF(vec) == VECSXP) memcpy(VECTOR_PTR(cdv), VECTOR_PTR(vec) + i0, sizeof(SEXP) * N);
                                                          ^
/usr/include/ssp/string.h:82:1: note: expected 'const void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
ctapply.c:69:6: warning: implicit declaration of function 'NAMED' [-Wimplicit-function-declaration]
  if (NAMED(eres) > 1) eres = duplicate(eres);
      ^~~~~
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2    -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2  -c dummy.c -o dummy.o
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2    -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2  -c fasthash.c -o fasthash.o
fasthash.c: In function 'new_hash':
fasthash.c:65:14: warning: implicit declaration of function 'DATAPTR'; did you mean 'DATAPTR_RO'? [-Wimplicit-function-declaration]
     h->src = DATAPTR(h->parent);
              ^~~~~~~
              DATAPTR_RO
fasthash.c:65:12: warning: assignment makes pointer from integer without a cast [-Wint-conversion]
     h->src = DATAPTR(h->parent);
            ^
fasthash.c: In function 'hash_fin':
fasthash.c:80:27: warning: implicit declaration of function 'EXTPTR_PTR'; did you mean 'EXTPTRSXP'? [-Wimplicit-function-declaration]
     hash_t *h = (hash_t*) EXTPTR_PTR(ho);
                           ^~~~~~~~~~
                           EXTPTRSXP
fasthash.c:80:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     hash_t *h = (hash_t*) EXTPTR_PTR(ho);
                 ^
fasthash.c: In function 'append_hash':
fasthash.c:268:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  SEXP *sv = (SEXP*) DATAPTR(x);
             ^
fasthash.c: In function 'unwrap':
fasthash.c:285:9: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     h = (hash_t*) EXTPTR_PTR(ht);
         ^
fasthash.c: In function 'mk_hash':
fasthash.c:340:9: warning: implicit declaration of function 'OBJECT'; did you mean 'OBJSXP'? [-Wimplicit-function-declaration]
     if (OBJECT(x)) {
         ^~~~~~
         OBJSXP
In file included from /usr/include/ssp/stdio.h:34:0,
                 from /usr/include/stdio.h:597,
                 from /tmp/math/R-fastmatch/work/.buildlink/lib/R/include/Rinternals.h:38,
                 from common.h:8,
                 from fasthash.c:19:
fasthash.c: In function 'get_table':
fasthash.c:429:12: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
     memcpy(DATAPTR(res), DATAPTR(h->parent), sz);
            ^
fasthash.c:429:12: note: expected 'const void *' but argument is of type 'int'
fasthash.c:429:12: warning: passing argument 1 of '__builtin_object_size' makes pointer from integer without a cast [-Wint-conversion]
     memcpy(DATAPTR(res), DATAPTR(h->parent), sz);
            ^
fasthash.c:429:12: note: expected 'const void *' but argument is of type 'int'
In file included from /usr/include/string.h:127:0,
                 from fasthash.c:26:
fasthash.c:429:12: warning: passing argument 1 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
     memcpy(DATAPTR(res), DATAPTR(h->parent), sz);
            ^
fasthash.c:429:12: note: expected 'void *' but argument is of type 'int'
fasthash.c:429:26: warning: passing argument 2 of '__builtin___memcpy_chk' makes pointer from integer without a cast [-Wint-conversion]
     memcpy(DATAPTR(res), DATAPTR(h->parent), sz);
                          ^
fasthash.c:429:26: note: expected 'const void *' but argument is of type 'int'
fasthash.c:429:12: warning: passing argument 1 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
     memcpy(DATAPTR(res), DATAPTR(h->parent), sz);
            ^
/usr/include/ssp/string.h:82:1: note: expected 'void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
fasthash.c:429:26: warning: passing argument 2 of '__memcpy_ichk' makes pointer from integer without a cast [-Wint-conversion]
     memcpy(DATAPTR(res), DATAPTR(h->parent), sz);
                          ^
/usr/include/ssp/string.h:82:1: note: expected 'const void * restrict' but argument is of type 'int'
 __ssp_bos_icheck3_restrict(memcpy, void *, const void *)
 ^
fasthash.c: In function 'get_values':
fasthash.c:474:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
      SEXP *rv = (SEXP*) DATAPTR(x);
                 ^
gcc -I"/usr/pkg/lib/R/include" -DNDEBUG   -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2    -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2  -c fastmatch.c -o fastmatch.o
fastmatch.c: In function 'hash_fin':
fastmatch.c:76:25: warning: implicit declaration of function 'EXTPTR_PTR'; did you mean 'EXTPTRSXP'? [-Wimplicit-function-declaration]
   hash_t *h = (hash_t*) EXTPTR_PTR(ho);
                         ^~~~~~~~~~
                         EXTPTRSXP
fastmatch.c:76:15: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
   hash_t *h = (hash_t*) EXTPTR_PTR(ho);
               ^
fastmatch.c: In function 'fmatch':
fastmatch.c:263:9: warning: implicit declaration of function 'OBJECT'; did you mean 'OBJSXP'? [-Wimplicit-function-declaration]
     if (OBJECT(x)) {
         ^~~~~~
         OBJSXP
fastmatch.c:304:6: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
  h = (hash_t*) EXTPTR_PTR(a);
      ^
fastmatch.c:322:15: warning: implicit declaration of function 'DATAPTR'; did you mean 'DATAPTR_RO'? [-Wimplicit-function-declaration]
  h = new_hash(DATAPTR(y), XLENGTH(y));
               ^~~~~~~
               DATAPTR_RO
fastmatch.c:322:15: warning: passing argument 1 of 'new_hash' makes pointer from integer without a cast [-Wint-conversion]
fastmatch.c:54:16: note: expected 'void *' but argument is of type 'int'
 static hash_t *new_hash(void *src, hash_index_t len) {
                ^~~~~~~~
fastmatch.c:334:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
      hash_t *lh = (hash_t*) EXTPTR_PTR(a);
                   ^
fastmatch.c:351:13: warning: assignment makes pointer from integer without a cast [-Wint-conversion]
      h->src = DATAPTR(y); /* this is ugly, but we need to adjust the source since we changed it */
             ^
fastmatch.c:419:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
       SEXP *k = (SEXP*) DATAPTR(x);
                 ^
fastmatch.c:433:17: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
       SEXP *k = (SEXP*) DATAPTR(x);
                 ^
fastmatch.c:453:13: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
   SEXP *k = (SEXP*) DATAPTR(x);
             ^
fastmatch.c: In function 'coalesce':
fastmatch.c:473:18: warning: passing argument 1 of 'new_hash' makes pointer from integer without a cast [-Wint-conversion]
     h = new_hash(DATAPTR(x), XLENGTH(x));
                  ^~~~~~~
fastmatch.c:54:16: note: expected 'void *' but argument is of type 'int'
 static hash_t *new_hash(void *src, hash_index_t len) {
                ^~~~~~~~
gcc -shared -L/usr/pkg/lib/R/lib -Wl,-R/usr/pkg/lib/R/lib -Wl,-zrelro -L/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -o fastmatch.so ctapply.o dummy.o fasthash.o fastmatch.o -L/usr/pkg/lib/R/lib
installing to /tmp/math/R-fastmatch/work/.destdir/usr/pkg/lib/R/library/00LOCK-fastmatch/00new/fastmatch/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for 'fastmatch' in dyn.load(file, DLLpath = DLLpath, ...):
 unable to load shared object '/tmp/math/R-fastmatch/work/.destdir/usr/pkg/lib/R/library/00LOCK-fastmatch/00new/fastmatch/libs/fastmatch.so':
  /tmp/math/R-fastmatch/work/.destdir/usr/pkg/lib/R/library/00LOCK-fastmatch/00new/fastmatch/libs/fastmatch.so: Undefined PLT symbol "VECTOR_PTR" (symnum = 29)
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/tmp/math/R-fastmatch/work/.destdir/usr/pkg/lib/R/library/fastmatch'
*** Error code 1

Stop.
make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-fastmatch
*** Error code 1

Stop.
make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-fastmatch