=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Installing for R-Rcpp-1.0.14 => Generating pre-install file lists => Creating installation directories * installing *source* package 'Rcpp' ... ** this is package 'Rcpp' version '1.0.14' files 'inst/discovery/cxx0x.R', 'inst/examples/ConvolveBenchmarks/buildAndRun.sh', 'inst/examples/ConvolveBenchmarks/exampleRCode.r', 'inst/examples/ConvolveBenchmarks/overhead.r', 'inst/examples/ConvolveBenchmarks/overhead.sh', 'inst/examples/FastLM/benchmark.r', 'inst/examples/FastLM/benchmarkLongley.r', 'inst/examples/FastLM/fastLMviaArmadillo.r', 'inst/examples/FastLM/fastLMviaGSL.r', 'inst/examples/Misc/fibonacci.r', 'inst/examples/Misc/ifelseLooped.r', 'inst/examples/Misc/newFib.r', 'inst/examples/Misc/piBySimulation.r', 'inst/examples/OpenMP/OpenMPandInline.r', 'inst/examples/RcppInline/RObject.r', 'inst/examples/RcppInline/RcppInlineExample.r', 'inst/examples/RcppInline/RcppInlineWithLibsExamples.r', 'inst/examples/RcppInline/RcppSimpleExample.r', 'inst/examples/RcppInline/UncaughtExceptions.r', 'inst/examples/RcppInline/external_pointer.r', 'inst/examples/SugarPerformance/sugarBenchmarks.R', 'inst/examples/functionCallback/newApiExample.r', 'inst/include/Rcpp/exceptions.h', 'inst/include/Rcpp/exceptions/cpp11/exceptions.h', 'inst/include/Rcpp/exceptions/cpp98/exceptions.h', 'inst/include/Rcpp/utils/tinyformat.h' have the wrong MD5 checksums ** using staged installation ** libs using C++ compiler: 'g++ (nb4 20200810) 7.5.0' c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -fpic -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -Dz_off_t=long -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/pkg/include/libxml2 -c api.cpp -o api.o api.cpp:31:10: fatal error: R_ext/PrtUtil.h: No such file or directory #include ^~~~~~~~~~~~~~~~~ compilation terminated. *** Error code 1 Stop. make: stopped in /tmp/devel/R-Rcpp/work/Rcpp/src ERROR: compilation failed for package 'Rcpp' * removing '/tmp/devel/R-Rcpp/work/.destdir/usr/pkg/lib/R/library/Rcpp' *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/devel/R-Rcpp *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/devel/R-Rcpp