=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for scipy-1.17.0.tar.gz => Checksum SHA512 OK for scipy-1.17.0.tar.gz ===> Installing dependencies for py314-scipy-1.17.0 ========================================================================== The supported build options for py314-scipy are: suitesparse You can select which build options to use by setting PKG_DEFAULT_OPTIONS or the following variable. Its current value is shown: PKG_OPTIONS.scipy (not defined) ========================================================================== ========================================================================== The following variables will affect the build process of this package, py314-scipy-1.17.0. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 313 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python314 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py314-cython>=3.0.8: found py314-cython-3.2.4 => Tool dependency meson>=1.5.0: found meson-1.10.1 => Tool dependency py314-meson_python>=0.15.0: found py314-meson_python-0.19.0 => Tool dependency py314-wheel-[0-9]*: found py314-wheel-0.45.1nb1 => Tool dependency py314-pythran>=0.14.0: found py314-pythran-0.18.1 => Tool dependency py314-build>=0: found py314-build-1.4.0 => Tool dependency py314-installer>=0.7.0nb1: found py314-installer-0.7.0nb3 => Tool dependency mktools-[0-9]*: found mktools-20250213 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.5.1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency py314-pybind11>=2.5.0: found py314-pybind11-3.0.1 => Build dependency py314-pythran>=0.10.0: found py314-pythran-0.18.1 => Build dependency python314>=3.14.0: found python314-3.14.2nb1 => Full dependency cblas>=3.9.1nb1: found cblas-3.12.0 => Full dependency fftw>=3.3.10nb1: found fftw-3.3.10nb3 => Full dependency gcc10>=10.3.0nb2: found gcc10-10.5.0nb4 => Full dependency gcc10-libs>=10.2.0: found gcc10-libs-10.5.0nb5 => Full dependency lapack>=3.9.0nb1: found lapack-3.12.0 => Full dependency lapacke>=3.9.1nb2: found lapacke-3.12.0 => Full dependency py314-cython>=0.12.1: found py314-cython-3.2.4 => Full dependency py314-numpy>=2.0.0: found py314-numpy-2.4.1 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py314-scipy-1.17.0 ===> Extracting for py314-scipy-1.17.0 ===> Patching for py314-scipy-1.17.0 => Applying pkgsrc patches for py314-scipy-1.17.0 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_ndimage_src___rank__filter__1d.cpp => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_ndimage_src___rank__filter__1d.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_ndimage_src___rank__filter__1d.cpp,v 1.2 2026/01/11 08:15:05 adam Exp $ | |Avoid WRAP conflict from sys/termios.h on illumos. | |--- scipy/ndimage/src/_rank_filter_1d.cpp.orig 2026-01-10 17:57:13.000000000 +0000 |+++ scipy/ndimage/src/_rank_filter_1d.cpp -------------------------- Patching file scipy/ndimage/src/_rank_filter_1d.cpp using Plan A... Hunk #1 succeeded at 48. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.4 2023/07/17 19:39:56 tnn Exp $ | |Fix missing isnan/isinf. |Build breaks on at least NetBSD-10.99.4-aarch64 without this: | |scipy/spatial/_ckdtree.cxx: In function 'PyObject* __pyx_pf_5scipy_7spatial_8_ckdtree_7cKDTree_16count_neighbors(__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, __pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, PyObject*, __pyx_t_5numpy_float64_t, PyObject*, int)': |scipy/spatial/_ckdtree.cxx:13392:19: error: 'isinf' was not declared in this scope; did you mean 'std::isinf'? | |--- scipy/spatial/_ckdtree.pyx.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/spatial/_ckdtree.pyx -------------------------- Patching file scipy/spatial/_ckdtree.pyx using Plan A... Hunk #1 succeeded at 16. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_boost__special__functions.h => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_boost__special__functions.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_boost__special__functions.h,v 1.3 2026/01/11 08:15:05 adam Exp $ | |Fix build. | |--- scipy/special/boost_special_functions.h.orig 2026-01-10 17:57:13.000000000 +0000 |+++ scipy/special/boost_special_functions.h -------------------------- Patching file scipy/special/boost_special_functions.h using Plan A... Hunk #1 succeeded at 47. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_wright.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ | |Fix missing isnan/isinf. | |--- scipy/special/wright.hh.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/special/wright.hh -------------------------- Patching file scipy/special/wright.hh using Plan A... Hunk #1 succeeded at 2. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_stats___unuran_meson.build,v 1.1 2023/08/26 19:50:01 tnn Exp $ | |On NetBSD/powerpc and evbarm, you can't build with _ISOC99_SOURCE defined, |the include of deep down in the python headers will fail |with undefined types. | |--- scipy/stats/_unuran/meson.build.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/stats/_unuran/meson.build -------------------------- Patching file scipy/stats/_unuran/meson.build using Plan A... Hunk #1 succeeded at 208 (offset 4 lines). done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-subprojects_xsf_include_xsf_amos_amos.h => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-subprojects_xsf_include_xsf_amos_amos.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-subprojects_xsf_include_xsf_amos_amos.h,v 1.2 2025/10/30 14:58:40 adam Exp $ | |Prefer C++ headers. | |--- subprojects/xsf/include/xsf/amos/amos.h.orig 2025-10-10 18:07:54.000000000 +0000 |+++ subprojects/xsf/include/xsf/amos/amos.h -------------------------- Patching file subprojects/xsf/include/xsf/amos/amos.h using Plan A... Hunk #1 succeeded at 95. done ===> Creating toolchain wrappers for py314-scipy-1.17.0 ===> Configuring for py314-scipy-1.17.0 /bin/ln -sf /usr/pkg/bin/pybind11-config-3.14 /tmp/math/py-scipy/work/.buildlink/bin/pybind11-config => Fixing f2py binary name. => Fixing pythran binary name. => Checking for portability problems in extracted files