=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for py313-macs3-3.0.2
* Building wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running bdist_wheel
running build
running build_py
creating build/lib.netbsd-9.3-amd64-cpython-313/MACS3
copying MACS3/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3
creating build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO
copying MACS3/IO/OutputWriter.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO
copying MACS3/IO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO
creating build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal
copying MACS3/Signal/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal
creating build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands
creating build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/HMMR_EM.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_EM.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/HMMR_EM.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_EM.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_EM.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/HMMR_Signal_Processing.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/HMMR_Signal_Processing.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.so
building 'MACS3.Signal.HMMR_HMM' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/HMMR_HMM.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_HMM.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/HMMR_HMM.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_HMM.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_HMM.so
building 'MACS3.Signal.Prob' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/Prob.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Prob.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/Prob.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Prob.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Prob.so
building 'MACS3.Signal.Region' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/Region.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Region.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Region.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Region.so
building 'MACS3.Signal.Pileup' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/Pileup.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Pileup.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/Pileup.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/cPosValCalculation.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/cPosValCalculation.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Pileup.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/cPosValCalculation.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Pileup.so
building 'MACS3.Signal.PileupV2' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/PileupV2.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PileupV2.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/PileupV2.c:1271:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PileupV2.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PileupV2.so
building 'MACS3.Signal.PeakModel' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/PeakModel.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakModel.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/PeakModel.c:1282:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
MACS3/Signal/PeakModel.c:3312:9: warning: 'Py_UNICODE' is deprecated [-Wdeprecated-declarations]
         Py_UNICODE *as_pyunicodes;
         ^~~~~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakModel.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakModel.so
building 'MACS3.Signal.PeakDetect' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/include/python3.13 -c MACS3/Signal/PeakDetect.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakDetect.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakDetect.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakDetect.so
building 'MACS3.Signal.SignalProcessing' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/SignalProcessing.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/SignalProcessing.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/SignalProcessing.c:1271:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/SignalProcessing.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/SignalProcessing.so
building 'MACS3.Signal.FixWidthTrack' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/FixWidthTrack.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/FixWidthTrack.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/FixWidthTrack.c:1273:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/FixWidthTrack.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/FixWidthTrack.so
building 'MACS3.Signal.PairedEndTrack' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/PairedEndTrack.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PairedEndTrack.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/PairedEndTrack.c:1271:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PairedEndTrack.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PairedEndTrack.so
building 'MACS3.Signal.BedGraph' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/BedGraph.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/BedGraph.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/BedGraph.c:1285:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
MACS3/Signal/BedGraph.c:3439:9: warning: 'Py_UNICODE' is deprecated [-Wdeprecated-declarations]
         Py_UNICODE *as_pyunicodes;
         ^~~~~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/BedGraph.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/BedGraph.so
building 'MACS3.Signal.ScoreTrack' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/ScoreTrack.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ScoreTrack.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/ScoreTrack.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ScoreTrack.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ScoreTrack.so
building 'MACS3.Signal.CallPeakUnit' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/CallPeakUnit.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/CallPeakUnit.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/CallPeakUnit.c:1274:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/CallPeakUnit.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/CallPeakUnit.so
building 'MACS3.Signal.VariantStat' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/VariantStat.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/VariantStat.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/VariantStat.c:1276:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/VariantStat.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/VariantStat.so
building 'MACS3.Signal.ReadAlignment' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/ReadAlignment.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ReadAlignment.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ReadAlignment.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ReadAlignment.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/Signal/RACollection.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/RACollection.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/RACollection.c:1302:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/Signal/swalign.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/swalign.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/bfc.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/bfc.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/bseq.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/bseq.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/bubble.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/bubble.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/htab.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/htab.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/ksw.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/ksw.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/kthread.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/kthread.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/mag.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/mag.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/misc.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/misc.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/mrope.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/mrope.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/rld0.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/rld0.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/rle.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/rle.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/rope.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/rope.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -IMACS3/Signal -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I./ -I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/pkg/include/python3.13 -c MACS3/fermi-lite/unitig.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/unitig.o -w -O3 -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd -DSIMDE_ENABLE_OPENMP
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/RACollection.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/swalign.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/bfc.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/bseq.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/bubble.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/htab.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/ksw.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/kthread.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/mag.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/misc.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/mrope.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/rld0.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/rle.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/rope.o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/fermi-lite/unitig.o -L/usr/pkg/lib -lm -lz -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/RACollection.so
building 'MACS3.Signal.UnitigRACollection' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/UnitigRACollection.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/UnitigRACollection.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/UnitigRACollection.c:1276:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/UnitigRACollection.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/UnitigRACollection.so
building 'MACS3.Signal.PosReadsInfo' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/PosReadsInfo.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PosReadsInfo.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/Signal/PosReadsInfo.c:1276:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PosReadsInfo.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PosReadsInfo.so
building 'MACS3.Signal.PeakVariants' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/Signal/PeakVariants.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakVariants.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakVariants.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakVariants.so
building 'MACS3.IO.Parser' extension
creating build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/IO/Parser.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/Parser.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/IO/Parser.c:1273:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/Parser.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/Parser.so
building 'MACS3.IO.PeakIO' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/include/python3.13 -c MACS3/IO/PeakIO.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/PeakIO.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/PeakIO.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/PeakIO.so
building 'MACS3.IO.BedGraphIO' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/include/python3.13 -c MACS3/IO/BedGraphIO.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/BedGraphIO.o -w -O3 -g0
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/BedGraphIO.o -L/usr/pkg/lib -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/BedGraphIO.so
building 'MACS3.IO.BAM' extension
gcc -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -fPIC -I/usr/pkg/lib/python3.13/site-packages/numpy/_core/include -I/usr/pkg/include/python3.13 -c MACS3/IO/BAM.c -o build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/BAM.o -w -O3 -g0
In file included from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1913:0,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
                 from /tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h:5,
                 from MACS3/IO/BAM.c:1276:
/tmp/biology/py-macs3/work/.buildlink/lib/python3.13/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
gcc -shared -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -O2 -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.13 -I/usr/pkg/include build/temp.netbsd-9.3-amd64-cpython-313/MACS3/IO/BAM.o -L/usr/pkg/lib -lm -o build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/BAM.so
running build_scripts
creating build/scripts-3.13
copying and adjusting bin/macs3 -> build/scripts-3.13
changing mode of build/scripts-3.13/macs3 from 644 to 755
installing to build/bdist.netbsd-9.3-amd64/wheel
running install
running install_lib
creating build/bdist.netbsd-9.3-amd64/wheel
creating build/bdist.netbsd-9.3-amd64/wheel/MACS3
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/__init__.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3
creating build/bdist.netbsd-9.3-amd64/wheel/MACS3/IO
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/OutputWriter.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/IO
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/__init__.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/IO
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/Parser.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/IO
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/PeakIO.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/IO
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/BedGraphIO.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/IO
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/IO/BAM.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/IO
creating build/bdist.netbsd-9.3-amd64/wheel/MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/__init__.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_EM.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_Signal_Processing.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/HMMR_HMM.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Prob.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Region.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/Pileup.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PileupV2.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakModel.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakDetect.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/SignalProcessing.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/FixWidthTrack.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PairedEndTrack.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/BedGraph.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ScoreTrack.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/CallPeakUnit.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/VariantStat.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/ReadAlignment.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/RACollection.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/UnitigRACollection.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PosReadsInfo.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Signal/PeakVariants.so -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Signal
creating build/bdist.netbsd-9.3-amd64/wheel/MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/__init__.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/bdgbroadcall_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/bdgcmp_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/bdgdiff_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/bdgopt_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/bdgpeakcall_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/callpeak_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/callvar_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/cmbreps_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/diffpeak_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/filterdup_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/hmmratac_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/pileup_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/predictd_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/randsample_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Commands/refinepeak_cmd.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Commands
creating build/bdist.netbsd-9.3-amd64/wheel/MACS3/Utilities
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities/Constants.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Utilities
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities/Logger.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Utilities
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities/OptValidator.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Utilities
copying build/lib.netbsd-9.3-amd64-cpython-313/MACS3/Utilities/__init__.py -> build/bdist.netbsd-9.3-amd64/wheel/./MACS3/Utilities
running install_egg_info
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
dependency /usr/pkg/lib/python3.13/site-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '.ipynb_checkpoints/*' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
Copying MACS3.egg-info to build/bdist.netbsd-9.3-amd64/wheel/./MACS3-3.0.2-py3.13.egg-info
running install_scripts
creating build/bdist.netbsd-9.3-amd64/wheel/macs3-3.0.2.data/scripts
copying build/scripts-3.13/macs3 -> build/bdist.netbsd-9.3-amd64/wheel/macs3-3.0.2.data/scripts
changing mode of build/bdist.netbsd-9.3-amd64/wheel/macs3-3.0.2.data/scripts/macs3 to 755
creating build/bdist.netbsd-9.3-amd64/wheel/macs3-3.0.2.dist-info/WHEEL
creating '/tmp/biology/py-macs3/work/MACS-3.0.2/dist/.tmp-3k48gkh8/macs3-3.0.2-cp313-cp313-netbsd_9_3_amd64.whl' and adding 'build/bdist.netbsd-9.3-amd64/wheel' to it
adding 'MACS3/__init__.py'
adding 'MACS3/Commands/__init__.py'
adding 'MACS3/Commands/bdgbroadcall_cmd.py'
adding 'MACS3/Commands/bdgcmp_cmd.py'
adding 'MACS3/Commands/bdgdiff_cmd.py'
adding 'MACS3/Commands/bdgopt_cmd.py'
adding 'MACS3/Commands/bdgpeakcall_cmd.py'
adding 'MACS3/Commands/callpeak_cmd.py'
adding 'MACS3/Commands/callvar_cmd.py'
adding 'MACS3/Commands/cmbreps_cmd.py'
adding 'MACS3/Commands/diffpeak_cmd.py'
adding 'MACS3/Commands/filterdup_cmd.py'
adding 'MACS3/Commands/hmmratac_cmd.py'
adding 'MACS3/Commands/pileup_cmd.py'
adding 'MACS3/Commands/predictd_cmd.py'
adding 'MACS3/Commands/randsample_cmd.py'
adding 'MACS3/Commands/refinepeak_cmd.py'
adding 'MACS3/IO/BAM.so'
adding 'MACS3/IO/BedGraphIO.so'
adding 'MACS3/IO/OutputWriter.py'
adding 'MACS3/IO/Parser.so'
adding 'MACS3/IO/PeakIO.so'
adding 'MACS3/IO/__init__.py'
adding 'MACS3/Signal/BedGraph.so'
adding 'MACS3/Signal/CallPeakUnit.so'
adding 'MACS3/Signal/FixWidthTrack.so'
adding 'MACS3/Signal/HMMR_EM.so'
adding 'MACS3/Signal/HMMR_HMM.so'
adding 'MACS3/Signal/HMMR_Signal_Processing.so'
adding 'MACS3/Signal/PairedEndTrack.so'
adding 'MACS3/Signal/PeakDetect.so'
adding 'MACS3/Signal/PeakModel.so'
adding 'MACS3/Signal/PeakVariants.so'
adding 'MACS3/Signal/Pileup.so'
adding 'MACS3/Signal/PileupV2.so'
adding 'MACS3/Signal/PosReadsInfo.so'
adding 'MACS3/Signal/Prob.so'
adding 'MACS3/Signal/RACollection.so'
adding 'MACS3/Signal/ReadAlignment.so'
adding 'MACS3/Signal/Region.so'
adding 'MACS3/Signal/ScoreTrack.so'
adding 'MACS3/Signal/SignalProcessing.so'
adding 'MACS3/Signal/UnitigRACollection.so'
adding 'MACS3/Signal/VariantStat.so'
adding 'MACS3/Signal/__init__.py'
adding 'MACS3/Utilities/Constants.py'
adding 'MACS3/Utilities/Logger.py'
adding 'MACS3/Utilities/OptValidator.py'
adding 'MACS3/Utilities/__init__.py'
adding 'macs3-3.0.2.data/scripts/macs3'
adding 'macs3-3.0.2.dist-info/LICENSE'
adding 'macs3-3.0.2.dist-info/METADATA'
adding 'macs3-3.0.2.dist-info/WHEEL'
adding 'macs3-3.0.2.dist-info/top_level.txt'
adding 'macs3-3.0.2.dist-info/RECORD'
removing build/bdist.netbsd-9.3-amd64/wheel
Successfully built macs3-3.0.2-cp313-cp313-netbsd_9_3_amd64.whl