=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for pandas-2.2.2.tar.gz => Checksum SHA512 OK for pandas-2.2.2.tar.gz ===> Installing dependencies for py313-pandas-2.2.2 ========================================================================== The following variables will affect the build process of this package, py313-pandas-2.2.2. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 312 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_PC = blas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * CBLAS_PC = cblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACKE_PC = lapacke * LAPACK_LIBS = -llapack -lblas * LAPACK_PC = lapack * PYPACKAGE = python313 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py313-cython>=0.29.33: found py313-cython-3.0.11 => Tool dependency meson>=1.2.2nb1: found meson-1.6.0 => Tool dependency py313-meson_python>=0.13.1: found py313-meson_python-0.17.0 => Tool dependency py313-versioneer-[0-9]*: found py313-versioneer-0.29 => Tool dependency py313-build>=0: found py313-build-1.2.2.post1 => Tool dependency py313-installer>=0.7.0nb1: found py313-installer-0.7.0nb1 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.3.0 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency gcc10>=10.3.0nb2: found gcc10-10.5.0nb2 => Full dependency py313-dateutil>=2.8.2: found py313-dateutil-2.9.0.0.0.0nb1 => Full dependency py313-pytz>=2020.1: found py313-pytz-2024.2 => Full dependency py313-tzdata>=2022.1: found py313-tzdata-2024.2 => Full dependency gcc10-libs>=10.2.0: found gcc10-libs-10.5.0nb3 => Full dependency py313-numpy>=1.23.2: found py313-numpy-2.1.2 => Full dependency python313>=3.13: found python313-3.13.0 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py313-pandas-2.2.2 ===> Extracting for py313-pandas-2.2.2 ===> Patching for py313-pandas-2.2.2 => Applying pkgsrc patches for py313-pandas-2.2.2 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-pandas/patches/patch-meson.build => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-pandas/patches/patch-meson.build Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-meson.build,v 1.1 2023/10/05 04:46:05 gutteridge Exp $ | |Allow for differences between meson's idea of the path to Python and the |version that's actually the target. (meson is not py-versioned.) | |--- meson.build.orig 1970-01-01 00:00:00.000000000 +0000 |+++ meson.build -------------------------- Patching file meson.build using Plan A... Hunk #1 succeeded at 2. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-pandas/patches/patch-pandas___libs_window_aggregations.pyx => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-pandas/patches/patch-pandas___libs_window_aggregations.pyx Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-pandas___libs_window_aggregations.pyx,v 1.3 2023/08/28 10:34:02 adam Exp $ | |On NetBSD, signbit and sqrt cannot be imported from "libc", because |even though is included, Python.h later includes | which in turn #undef's all the relevant definitions |from , forcing the use of the std:: variants of those |functions. So ... re-do how we import signbit() and sqrt(). | |Submitted upstream: |https://github.com/pandas-dev/pandas/pull/51049 | |--- pandas/_libs/window/aggregations.pyx.orig 2023-03-16 14:52:19.000000000 +0000 |+++ pandas/_libs/window/aggregations.pyx -------------------------- Patching file pandas/_libs/window/aggregations.pyx using Plan A... Hunk #1 succeeded at 1. Hunk #2 succeeded at 15. done cd /tmp/math/py-pandas/work/pandas-2.2.2 && /bin/rm -f pandas/_libs/window/aggregations.pyx.orig ===> Creating toolchain wrappers for py313-pandas-2.2.2 ===> Configuring for py313-pandas-2.2.2 => Fixing python binary name. => Checking for portability problems in extracted files