=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py311-gdal-3.9.0nb3 cd /tmp/geography/py-gdal/work/gdal-3.9.0 && mkdir build && cd build && cmake .. && cd swig/python && /usr/bin/make python_generated_files -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /tmp/geography/py-gdal/work/.cwrapper/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /tmp/geography/py-gdal/work/.cwrapper/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test test_sse -- Performing Test test_sse - Success -- Looking for C++ include xmmintrin.h -- Looking for C++ include xmmintrin.h - found -- Performing Test test_sse2 -- Performing Test test_sse2 - Success -- Looking for C++ include emmintrin.h -- Looking for C++ include emmintrin.h - found -- Performing Test test_ssse3 -- Performing Test test_ssse3 - Success -- Looking for C++ include tmmintrin.h -- Looking for C++ include tmmintrin.h - found -- Performing Test test_sse4.1 -- Performing Test test_sse4.1 - Success -- Looking for C++ include smmintrin.h -- Looking for C++ include smmintrin.h - found -- Performing Test test_avx -- Performing Test test_avx - Success -- Looking for C++ include immintrin.h -- Looking for C++ include immintrin.h - found -- Performing Test test_avx2 -- Performing Test test_avx2 - Success -- Found SWIG: /usr/pkg/bin/swig4.0 (found version "4.1.1") -- Found Python: /tmp/geography/py-gdal/work/.buildlink/bin/python3 (found suitable version "3.11.9", minimum required is "3.8") found components: Interpreter Development NumPy Development.Module Development.Embed -- Performing Test HAVE_WFLAG_ALL -- Performing Test HAVE_WFLAG_ALL - Success -- Performing Test HAVE_WFLAG_EXTRA -- Performing Test HAVE_WFLAG_EXTRA - Success -- Performing Test HAVE_WFLAG_INIT_SELF -- Performing Test HAVE_WFLAG_INIT_SELF - Success -- Performing Test HAVE_WFLAG_UNUSED_PARAMETER -- Performing Test HAVE_WFLAG_UNUSED_PARAMETER - Success -- Performing Test HAVE_WFLAG_MISSING_PROTOTYPES -- Performing Test HAVE_WFLAG_MISSING_PROTOTYPES - Success -- Performing Test HAVE_WFLAG_MISSING_DECLARATIONS -- Performing Test HAVE_WFLAG_MISSING_DECLARATIONS - Success -- Performing Test HAVE_WFLAG_SHORTEN_64_TO_32 -- Performing Test HAVE_WFLAG_SHORTEN_64_TO_32 - Failed -- Performing Test HAVE_WFLAG_LOGICAL_OP -- Performing Test HAVE_WFLAG_LOGICAL_OP - Success -- Performing Test HAVE_WFLAG_SHADOW -- Performing Test HAVE_WFLAG_SHADOW - Success -- Performing Test HAVE_WFLAG_SHADOW_FIELD -- Performing Test HAVE_WFLAG_SHADOW_FIELD - Failed -- Performing Test HAVE_WFLAG_MISSING_INCLUDE_DIRS -- Performing Test HAVE_WFLAG_MISSING_INCLUDE_DIRS - Success -- Performing Test HAVE_WFLAG_FORMAT_SECURITY -- Performing Test HAVE_WFLAG_FORMAT_SECURITY - Success -- Performing Test HAVE_WFLAG_ERROR_VLA -- Performing Test HAVE_WFLAG_ERROR_VLA - Success -- Performing Test HAVE_WFLAG_NO_CLOBBERED -- Performing Test HAVE_WFLAG_NO_CLOBBERED - Success -- Performing Test HAVE_WFLAG_DATE_TIME -- Performing Test HAVE_WFLAG_DATE_TIME - Success -- Performing Test HAVE_WFLAG_NULL_DEREFERENCE -- Performing Test HAVE_WFLAG_NULL_DEREFERENCE - Success -- Performing Test HAVE_WFLAG_DUPLICATE_COND -- Performing Test HAVE_WFLAG_DUPLICATE_COND - Failed -- Performing Test HAVE_WFLAG_EXTRA_SEMI -- Performing Test HAVE_WFLAG_EXTRA_SEMI - Failed -- Performing Test HAVE_WFLAG_COMMA -- Performing Test HAVE_WFLAG_COMMA - Failed -- Performing Test HAVE_WFLAG_FLOAT_CONVERSION -- Performing Test HAVE_WFLAG_FLOAT_CONVERSION - Success -- Performing Test HAVE_WFLAG_DOCUMENTATION_AND_NO_DEPRECATED -- Performing Test HAVE_WFLAG_DOCUMENTATION_AND_NO_DEPRECATED - Failed -- Performing Test HAVE_WFLAG_UNUSED_PRIVATE_FIELD -- Performing Test HAVE_WFLAG_UNUSED_PRIVATE_FIELD - Failed -- Performing Test HAVE_WFLAG_NON_VIRTUAL_DTOR -- Performing Test HAVE_WFLAG_NON_VIRTUAL_DTOR - Success -- Performing Test HAVE_WFLAG_OVERLOADED_VIRTUAL -- Performing Test HAVE_WFLAG_OVERLOADED_VIRTUAL - Success -- Performing Test HAVE_WFLAG_SUGGEST_OVERRIDE -- Performing Test HAVE_WFLAG_SUGGEST_OVERRIDE - Success -- Performing Test HAVE_FLAG_NO_OPERATOR_NAMES -- Performing Test HAVE_FLAG_NO_OPERATOR_NAMES - Success -- Performing Test HAVE_GCC_WARNING_ZERO_AS_NULL_POINTER_CONSTANT -- Performing Test HAVE_GCC_WARNING_ZERO_AS_NULL_POINTER_CONSTANT - Success -- Performing Test HAVE_WFLAG_OLD_STYLE_CAST -- Performing Test HAVE_WFLAG_OLD_STYLE_CAST - Success -- Performing Test HAVE_WFLAG_EFFCXX -- Performing Test HAVE_WFLAG_EFFCXX - Success -- Looking for vsnprintf -- Looking for vsnprintf - found -- Looking for getcwd -- Looking for getcwd - found -- Looking for fcntl.h -- Looking for fcntl.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for locale.h -- Looking for locale.h - found -- Looking for xlocale.h -- Looking for xlocale.h - not found -- Looking for direct.h -- Looking for direct.h - not found -- Looking for dlfcn.h -- Looking for dlfcn.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of int -- Check size of int - done -- Check size of unsigned long -- Check size of unsigned long - done -- Check size of long int -- Check size of long int - done -- Check size of void* -- Check size of void* - done -- Check size of size_t -- Check size of size_t - done -- Looking for ctime_r -- Looking for ctime_r - found -- Looking for gmtime_r -- Looking for gmtime_r - found -- Looking for localtime_r -- Looking for localtime_r - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test HAVE_PTHREAD_MUTEX_RECURSIVE -- Performing Test HAVE_PTHREAD_MUTEX_RECURSIVE - Success -- Performing Test HAVE_PTHREAD_MUTEX_ADAPTIVE_NP -- Performing Test HAVE_PTHREAD_MUTEX_ADAPTIVE_NP - Failed -- Performing Test HAVE_PTHREAD_SPIN_LOCK -- Performing Test HAVE_PTHREAD_SPIN_LOCK - Failed -- Performing Test HAVE_5ARGS_MREMAP -- Performing Test HAVE_5ARGS_MREMAP - Success -- Performing Test HAVE_PTHREAD_ATFORK -- Performing Test HAVE_PTHREAD_ATFORK - Success -- Looking for sys/stat.h -- Looking for sys/stat.h - found -- Looking for readlink -- Looking for readlink - found -- Looking for posix_spawnp -- Looking for posix_spawnp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for vfork -- Looking for vfork - found -- Looking for mmap -- Looking for mmap - found -- Looking for sigaction -- Looking for sigaction - found -- Looking for statvfs -- Looking for statvfs - found -- Looking for statvfs64 -- Looking for statvfs64 - not found -- Looking for lstat -- Looking for lstat - found -- Looking for getrlimit -- Looking for getrlimit - found -- Looking for RLIMIT_AS -- Looking for RLIMIT_AS - found -- Looking for sys/random.h -- Looking for sys/random.h - not found -- Looking for ftell64 -- Looking for ftell64 - not found -- Looking for ftello64 -- Looking for ftello64 - not found -- Looking for fseek64 -- Looking for fseek64 - not found -- Looking for fseeko64 -- Looking for fseeko64 - not found -- Performing Test VSI_NEED_LARGEFILE64_SOURCE -- Performing Test VSI_NEED_LARGEFILE64_SOURCE - Failed -- Looking for ftello -- Looking for ftello - found -- Looking for fseeko -- Looking for fseeko - found -- Looking for stat64 -- Looking for stat64 - not found -- Performing Test NO_UNIX_STDIO_64 -- Performing Test NO_UNIX_STDIO_64 - Failed -- Looking for fopen64 -- Looking for fopen64 - not found -- Check size of off_t -- Check size of off_t - done -- Looking for pread64 -- Looking for pread64 - not found -- Looking for ftruncate64 -- Looking for ftruncate64 - not found -- Performing Test HAVE_PREAD_BSD -- Performing Test HAVE_PREAD_BSD - Success -- Performing Test HAVE_USELOCALE -- Performing Test HAVE_USELOCALE - Failed -- Performing Test HAVE_HIDE_INTERNAL_SYMBOLS -- Performing Test HAVE_HIDE_INTERNAL_SYMBOLS - Success -- Performing Test HAVE_GCC_ATOMIC_BUILTINS -- Performing Test HAVE_GCC_ATOMIC_BUILTINS - Success -- Performing Test HAVE_GCC_BSWAP -- Performing Test HAVE_GCC_BSWAP - Success -- Performing Test HAVE_SC_PHYS_PAGES -- Performing Test HAVE_SC_PHYS_PAGES - Success -- Performing Test HAVE_SCHED_GETAFFINITY -- Performing Test HAVE_SCHED_GETAFFINITY - Failed -- Performing Test INT128_TEST -- Performing Test INT128_TEST - Success -- checking if sprintf can be overloaded for GDAL compilation -- Performing Test DEPRECATE_SPRINTF -- Performing Test DEPRECATE_SPRINTF - Failed -- Performing Test HAVE_SHARED_MUTEX -- Performing Test HAVE_SHARED_MUTEX - Success -- Looking for linux/userfaultfd.h -- Looking for linux/userfaultfd.h - not found -- GDAL_VERSION = 3.9.0 -- GDAL_ABI_FULL_VERSION = 35.3.9.0 -- GDAL_SOVERSION = 35 -- Could NOT find ODBC (missing: ODBC_LIBRARY ODBC_INCLUDE_DIR ODBCINST) -- Could NOT find ODBCCPP (missing: ODBCCPP_LIBRARY ODBCCPP_INCLUDE_DIR) -- Could NOT find MSSQL_ODBC (missing: MSSQL_ODBC_LIBRARY MSSQL_ODBC_INCLUDE_DIR MSSQL_ODBC_VERSION) -- Could NOT find MySQL (missing: MYSQL_LIBRARY MYSQL_INCLUDE_DIR) -- Found CURL: /usr/pkg/lib/libcurl.so (found suitable version "8.8.0", minimum required is "7.68") -- Performing Test Iconv_IS_BUILT_IN -- Performing Test Iconv_IS_BUILT_IN - Success -- Found Iconv: /usr/lib/libc.so -- Performing Test _ICONV_SECOND_ARGUMENT_IS_NOT_CONST -- Performing Test _ICONV_SECOND_ARGUMENT_IS_NOT_CONST - Failed -- Performing Test ICONV_HAS_EXTRA_CHARSETS -- Performing Test ICONV_HAS_EXTRA_CHARSETS - Success -- Found LibXml2: /usr/pkg/lib/libxml2.so (found version "2.12.4") -- Could NOT find EXPAT (missing: EXPAT_DIR) -- Found EXPAT: /usr/lib/libexpat.so (found version "2.2.8") -- Found XercesC: /usr/pkg/lib/libxerces-c.so (found version "3.2.4") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.10") -- Could NOT find Deflate (missing: Deflate_LIBRARY Deflate_INCLUDE_DIR) -- Found OpenSSL: /usr/lib/libcrypto.so (found version "1.1.1k") found components: SSL Crypto -- Could NOT find CryptoPP (missing: CRYPTOPP_LIBRARY CRYPTOPP_TEST_KNOWNBUG CRYPTOPP_INCLUDE_DIR) -- Could NOT find PROJ (missing: PROJ_DIR) -- Found PROJ: /usr/pkg/lib/libproj.so (found version "8.2.1") -- Found TIFF: /usr/pkg/lib/libtiff.so (found suitable version "4.6.0", minimum required is "4.1") -- Could NOT find ZSTD (missing: ZSTD_DIR) -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found ZSTD: /usr/pkg/lib/libzstd.so (found version "1.5.6") -- Could NOT find SFCGAL (missing: SFCGAL_LIBRARY SFCGAL_INCLUDE_DIR) -- Could NOT find GeoTIFF (missing: GeoTIFF_DIR) -- Found GeoTIFF: /usr/pkg/lib/libgeotiff.so (found version "1.7.3.0") -- Found PNG: /usr/pkg/lib/libpng16.so (found suitable version "1.6.43", minimum required is "1.6") -- Found JPEG: /usr/pkg/lib/libjpeg.so (found version "90") -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 - Failed -- Found GIF: /usr/pkg/lib/libgif.so (found version "5.2.1") -- Could NOT find JSONC (missing: JSONC_DIR) -- Could NOT find JSONC (missing: JSONC_LIBRARY JSONC_INCLUDE_DIR) -- Could NOT find OpenCAD (missing: OPENCAD_LIBRARY OPENCAD_INCLUDE_DIR) -- Found QHULL: /usr/pkg/lib/libqhull_r.so -- Could NOT find LERC (missing: LERC_LIBRARY LERC_INCLUDE_DIR) -- Could NOT find BRUNSLI (missing: BRUNSLI_ENC_LIB BRUNSLI_DEC_LIB BRUNSLI_INCLUDE_DIR) -- Could NOT find libQB3 (missing: libQB3_DIR) -- Could NOT find Shapelib (missing: Shapelib_INCLUDE_DIR Shapelib_LIBRARY) -- Found PCRE2: /usr/pkg/lib/libpcre2-8.so -- Looking for sqlite3_mutex_alloc -- Looking for sqlite3_mutex_alloc - found -- Looking for sqlite3_column_table_name -- Looking for sqlite3_column_table_name - found -- Looking for sqlite3_rtree_query_callback -- Looking for sqlite3_rtree_query_callback - not found -- Looking for sqlite3_load_extension -- Looking for sqlite3_load_extension - found -- Looking for sqlite3_progress_handler -- Looking for sqlite3_progress_handler - found -- Performing Test SQLite3_HAS_NON_DEPRECATED_AUTO_EXTENSION -- Performing Test SQLite3_HAS_NON_DEPRECATED_AUTO_EXTENSION - Success -- Found SQLite3: /usr/pkg/lib/libsqlite3.so (found suitable version "3.46.0", minimum required is "3.31") -- Found SPATIALITE: /usr/pkg/lib/libspatialite.so (found suitable version "5.1", minimum required is "4.1.2") -- Could NOT find RASTERLITE2 (missing: RASTERLITE2_LIBRARY RASTERLITE2_INCLUDE_DIR) (Required is at least version "1.1.0") -- Could NOT find LibKML (missing: LIBKML_BASE_LIBRARY LIBKML_INCLUDE_DIR LIBKML_DOM_LIBRARY LIBKML_ENGINE_LIBRARY) -- Found HDF5: /usr/pkg/lib/libhdf5.so;/usr/pkg/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libm.so (found version "1.12.2") found components: C -- Found WebP: /usr/pkg/lib/libwebp.so -- Found FreeXL: /usr/pkg/lib/libfreexl.so -- Could NOT find MRSID (missing: MRSID_LIBRARY MRSID_INCLUDE_DIR) -- Could NOT find Armadillo (missing: ARMADILLO_INCLUDE_DIR) -- Could NOT find HDF4 (missing: HDF4_df_LIBRARY HDF4_mfhdf_LIBRARY HDF4_INCLUDE_DIR) -- Could NOT find ECW (missing: ECW_LIBRARY ECWnet_LIBRARY ECWC_LIBRARY NCSUtil_LIBRARY ECW_INCLUDE_DIR) -- Could NOT find NetCDF (missing: NetCDF_DIR) -- Found NetCDF: /usr/pkg/lib/libnetcdf.so (Required is at least version "4.7") CMake Warning at cmake/helpers/CheckDependentLibraries.cmake:182 (message): NetCDF has unknown version. Assuming it is at least matching the minimum version required of 4.7 Call Stack (most recent call first): cmake/helpers/CheckDependentLibraries.cmake:718 (gdal_check_package) gdal.cmake:266 (include) CMakeLists.txt:240 (include) -- Could NOT find OGDI (missing: OGDI_LIBRARY OGDI_INCLUDE_DIRS) -- Looking for CL_VERSION_3_0 -- Looking for CL_VERSION_3_0 - not found -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - not found -- Looking for CL_VERSION_2_1 -- Looking for CL_VERSION_2_1 - not found -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Could NOT find PostgreSQL (missing: PostgreSQL_LIBRARY PostgreSQL_INCLUDE_DIR) -- Could NOT find FYBA (missing: FYBA_FYBA_LIBRARY FYBA_FYGM_LIBRARY FYBA_FYUT_LIBRARY FYBA_INCLUDE_DIR) -- Found LibLZMA: /usr/lib/liblzma.so (found version "5.2.4") -- Found LZ4: /usr/pkg/lib/liblz4.so -- Could NOT find Blosc (missing: BLOSC_LIBRARY BLOSC_INCLUDE_DIR) -- Could NOT find basisu (missing: basisu_DIR) -- Could NOT find IDB (missing: IDB_INCLUDE_DIR IDB_IFCPP_LIBRARY IDB_IFDMI_LIBRARY IDB_IFSQL_LIBRARY IDB_IFCLI_LIBRARY) -- Could NOT find rdb (missing: rdb_DIR) -- Could NOT find TileDB (missing: TileDB_DIR) -- Could NOT find OpenEXR (missing: OpenEXR_LIBRARY OpenEXR_UTIL_LIBRARY OpenEXR_HALF_LIBRARY OpenEXR_IEX_LIBRARY OpenEXR_INCLUDE_DIR Imath_INCLUDE_DIR) -- Could NOT find MONGOCXX (missing: MONGOCXX_INCLUDE_DIR BSONCXX_INCLUDE_DIR MONGOCXX_LIBRARY BSONCXX_LIBRARY) -- Found OpenJPEG: /usr/pkg/lib/libopenjp2.so (found suitable version "2.5.2", minimum required is "2.3.1") -- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 AWT JVM) -- Could NOT find HDFS (missing: HDFS_LIBRARY HDFS_INCLUDE_DIR) -- Could NOT find Poppler (missing: Poppler_LIBRARY Poppler_INCLUDE_DIR) (Required is at least version "0.86") -- Could NOT find Podofo (missing: PODOFO_LIBRARY PODOFO_INCLUDE_DIR) -- Could NOT find Oracle (missing: Oracle_LIBRARY Oracle_INCLUDE_DIR) -- Could NOT find FileGDB (missing: FileGDB_LIBRARY FileGDB_INCLUDE_DIR) -- Could NOT find KDU (missing: KDU_INCLUDE_DIR KDU_LIBRARY KDU_AUX_LIBRARY) (found version "") -- Could NOT find LURATECH (missing: LURATECH_LIBRARY LURATECH_INCLUDE_DIR) -- Could NOT find Arrow (missing: Arrow_DIR) -- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 AWT JVM) -- Could NOT find Java (missing: Java_JAVA_EXECUTABLE Java_JAVAC_EXECUTABLE Java_JAR_EXECUTABLE Java_JAVADOC_EXECUTABLE Java_JAVAH_EXECUTABLE Runtime Development) -- Could NOT find CSharp (missing: CSHARP_TYPE CSHARP_VERSION CSHARP_COMPILER) -- Performing Test HAS_NO_UNDEFINED -- Performing Test HAS_NO_UNDEFINED - Success -- Performing Test COMPILER_SUPPORTS_CXX17 -- Performing Test COMPILER_SUPPORTS_CXX17 - Success -- Could NOT find BISON (missing: BISON_EXECUTABLE) CMake Warning at frmts/hdf5/CMakeLists.txt:74 (message): HDF5 library does not seem to have thread-safety enabled. Adding a global lock on GDAL side -- Looking for sqlite3ext.h -- Looking for sqlite3ext.h - found CMake Error at cmake/helpers/CheckDependentLibraries.cmake:587 (message): /usr/pkg/lib/libsqlite3.so lacks the RTree extension! Spatialite will not behave properly. Define the ACCEPT_MISSING_SQLITE3_RTREE:BOOL=ON CMake variable if you want to build despite this limitation. Call Stack (most recent call first): ogr/ogrsf_frmts/sqlite/CMakeLists.txt:75 (check_sqlite3_rtree) -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/geography/py-gdal *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/geography/py-gdal