=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for macs-3.0.1.tar.gz
=> Checksum SHA512 OK for macs-3.0.1.tar.gz
===> Installing dependencies for py310-macs3-3.0.1
==========================================================================
The following variables will affect the build process of this package,
py310-macs3-3.0.1.  Their current value is shown below:

        * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp
        * PYTHON_VERSION_DEFAULT = 311

Based on these variables, the following variables have been set:

        * BLAS_INCLUDES = -I/usr/pkg/include/netlib
        * BLAS_LIBS = -lblas
        * BLAS_PC = blas
        * BLAS_TYPE = netlib
        * CBLAS_LIBS = -lcblas -lblas
        * CBLAS_PC = cblas
        * LAPACKE_LIBS = -llapacke -llapack -lblas
        * LAPACKE_PC = lapacke
        * LAPACK_LIBS = -llapack -lblas
        * LAPACK_PC = lapack
        * PYPACKAGE = python310

You may want to abort the process now with CTRL-C and change the value
of variables in the first group before continuing.  Be sure to run
`/usr/bin/make clean' after the changes.
==========================================================================
=> Tool dependency py310-setuptools>=0: found py310-setuptools-69.1.1
=> Tool dependency py310-wheel>=0: found py310-wheel-0.42.0
=> Tool dependency py310-build>=0: found py310-build-1.1.1
=> Tool dependency py310-installer>=0.7.0nb1: found py310-installer-0.7.0nb1
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency bash-[0-9]*: found bash-5.2.26
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency simde>=0.7.2: found simde-0.7.2
=> Full dependency py310-hmmlearn>=0.3: found py310-hmmlearn-0.3.2
=> Full dependency py310-cykhash>=2.0: found py310-cykhash-2.0.1nb1
=> Full dependency python310>=3.10: found python310-3.10.13nb4
=> Full dependency py310-numpy>=1.20.3nb1: found py310-numpy-1.26.4
=> Full dependency py310-cython>=0.12.1: found py310-cython-3.0.9
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for py310-macs3-3.0.1
===> Extracting for py310-macs3-3.0.1
===> Patching for py310-macs3-3.0.1
=> Applying pkgsrc patches for py310-macs3-3.0.1
=> Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/py-macs3/patches/patch-MACS3_fermi-lite_ksw.c
=> Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/py-macs3/patches/patch-MACS3_fermi-lite_ksw.c
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-MACS3_fermi-lite_ksw.c,v 1.2 2024/02/28 13:38:48 bacon Exp $
|
|# Use SIMDE sse2.h
|
|--- MACS3/fermi-lite/ksw.c.orig	2023-12-21 22:20:16.716124047 +0000
|+++ MACS3/fermi-lite/ksw.c
--------------------------
Patching file MACS3/fermi-lite/ksw.c using Plan A...
Hunk #1 succeeded at 28.
done
===> Creating toolchain wrappers for py310-macs3-3.0.1
===> Configuring for py310-macs3-3.0.1
=> Replacing bash interpreter in test/cmdlinetest* test/prockreport test/*.py test/pyprofile*.
INFO: [replace-interpreter] Nothing changed in test/jaccard.py.
INFO: [replace-interpreter] Nothing changed in test/test_BAMBAI.py.
INFO: [replace-interpreter] Nothing changed in test/test_BedGraph.py.
INFO: [replace-interpreter] Nothing changed in test/test_BedGraphIO.py.
INFO: [replace-interpreter] Nothing changed in test/test_CallPeakUnit.py.
INFO: [replace-interpreter] Nothing changed in test/test_FixWidthTrack.py.
INFO: [replace-interpreter] Nothing changed in test/test_HMMR_HMM.py.
INFO: [replace-interpreter] Nothing changed in test/test_PairedEndTrack.py.
INFO: [replace-interpreter] Nothing changed in test/test_Parser.py.
INFO: [replace-interpreter] Nothing changed in test/test_PeakDetect.py.
INFO: [replace-interpreter] Nothing changed in test/test_PeakIO.py.
INFO: [replace-interpreter] Nothing changed in test/test_PeakModel.py.
INFO: [replace-interpreter] Nothing changed in test/test_Pileup.py.
INFO: [replace-interpreter] Nothing changed in test/test_Prob.py.
INFO: [replace-interpreter] Nothing changed in test/test_Region.py.
INFO: [replace-interpreter] Nothing changed in test/test_ScoreTrack.py.
INFO: [replace-interpreter] Nothing changed in test/test_SignalProcessing.py.
INFO: [replace-interpreter] Nothing changed in test/test_online.py.
INFO: [replace-interpreter] Nothing changed in test/pyprofile_stat.
=> Checking for portability problems in extracted files