=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Installing for R-lme4-1.1.34
=> Generating pre-install file lists
=> Creating installation directories
* installing *source* package 'lme4' ...
** package 'lme4' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++ (nb4 20200810) 7.5.0'
c++ -std=gnu++17 -I"/usr/pkg/lib/R/include" -DNDEBUG  -I'/usr/pkg/lib/R/library/Rcpp/include' -I'/usr/pkg/lib/R/library/RcppEigen/include' -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5   -DNDEBUG -DEIGEN_DONT_VECTORIZE -fpic  -O2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/pkg/include/freetype2 -I/usr/pkg/include/harfbuzz -I/usr/include/krb5  -c external.cpp -o external.o
In file included from predModule.h:13:0,
                 from external.cpp:8:
lme4CholmodDecomposition.h:20:72: error: expected template-name before '<' token
     class lme4CholmodDecomposition : public Eigen::CholmodDecomposition<_MatrixType, _UpLo> {
                                                                        ^
lme4CholmodDecomposition.h:20:72: error: expected '{' before '<' token
In file included from predModule.h:13:0,
                 from external.cpp:8:
lme4CholmodDecomposition.h: In function 'SEXPREC* lme4::Eigen_cholmod_wrap(const lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<Scalar> >&)':
lme4CholmodDecomposition.h:77:15: error: 'cholmod_factor' does not name a type; did you mean 'chkder_factor'?
         const cholmod_factor* f = obj.factor();
               ^~~~~~~~~~~~~~
               chkder_factor
lme4CholmodDecomposition.h:78:13: error: 'f' was not declared in this scope
         if (f->minor < f->n)
             ^
lme4CholmodDecomposition.h:82:36: error: 'f' was not declared in this scope
         ::Rcpp::S4 ans(std::string(f->is_super ? "dCHMsuper" : "dCHMsimpl"));
                                    ^
In file included from external.cpp:8:0:
predModule.h: At global scope:
predModule.h:40:23: error: field 'd_L' has incomplete type 'lme4::merPredD::ChmDecomp {aka lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<double, 0, int> >}'
         ChmDecomp     d_L;
                       ^~~
In file included from predModule.h:13:0,
                 from external.cpp:8:
lme4CholmodDecomposition.h:20:11: note: declaration of 'lme4::merPredD::ChmDecomp {aka class lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<double, 0, int> >}'
     class lme4CholmodDecomposition : public Eigen::CholmodDecomposition<_MatrixType, _UpLo> {
           ^~~~~~~~~~~~~~~~~~~~~~~~
external.cpp: In function 'SEXPREC* glmerAGQ(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
external.cpp:437:18: error: invalid use of incomplete type 'const ChmDecomp {aka const class lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<double, 0, int> >}'
         if (pp->L().factor()->nzmax !=  q)
             ~~~~~^~
In file included from predModule.h:13:0,
                 from external.cpp:8:
lme4CholmodDecomposition.h:20:11: note: declaration of 'lme4::merPredD::ChmDecomp {aka class lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<double, 0, int> >}'
     class lme4CholmodDecomposition : public Eigen::CholmodDecomposition<_MatrixType, _UpLo> {
           ^~~~~~~~~~~~~~~~~~~~~~~~
external.cpp:439:49: error: invalid use of incomplete type 'const ChmDecomp {aka const class lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<double, 0, int> >}'
         const Ar1         sd(MAr1((double*)pp->L().factor()->x, q).inverse());
                                            ~~~~~^~
In file included from predModule.h:13:0,
                 from external.cpp:8:
lme4CholmodDecomposition.h:20:11: note: declaration of 'lme4::merPredD::ChmDecomp {aka class lme4::lme4CholmodDecomposition<Eigen::SparseMatrix<double, 0, int> >}'
     class lme4CholmodDecomposition : public Eigen::CholmodDecomposition<_MatrixType, _UpLo> {
           ^~~~~~~~~~~~~~~~~~~~~~~~
*** Error code 1

Stop.
make: stopped in /tmp/math/R-lme4/work/lme4/src
ERROR: compilation failed for package 'lme4'
* removing '/tmp/math/R-lme4/work/.destdir/usr/pkg/lib/R/library/lme4'
*** Error code 1

Stop.
make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-lme4
*** Error code 1

Stop.
make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/R-lme4