=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py310-tables-3.7.0nb2 (cd /tmp/math/py-tables/work/tables-3.7.0/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\ DL_LDFLAGS=\ -pthread DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.10 CC=gcc CFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python3.10 CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python3.10 CXX=c++ CXXFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python3.10 COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-Wl,-zrelro\ -L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib LINKER_RPATH_FLAG=-R PATH=/tmp/math/py-tables/work/.cwrapper/bin:/tmp/math/py-tables/work/.buildlink/bin:/tmp/math/py-tables/work/.gcc/bin:/tmp/math/py-tables/work/.tools/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/pkg/bin:/usr/X11R7/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc HOME=/tmp/math/py-tables/work/.home CWRAPPERS_CONFIG_DIR=/tmp/math/py-tables/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/X11R7 PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 775 INSTALL_INFO= MAKEINFO=/tmp/math/py-tables/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/tmp/math/py-tables/work/.tools/bin/itstool GDBUS_CODEGEN=/tmp/math/py-tables/work/.tools/bin/gdbus-codegen PKG_CONFIG=/tmp/math/py-tables/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/tmp/math/py-tables/work/.buildlink/lib/pkgconfig:/tmp/math/py-tables/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/tmp/math/py-tables/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/tmp/math/py-tables/work/.cwrapper/config /usr/pkg/bin/python3.10 setup.py build --blosc=/usr/pkg --bzip2=/usr --hdf5=/usr/pkg --lzo=/usr/pkg -j4) /tmp/math/py-tables/work/tables-3.7.0/setup.py:18: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources Error compiling Cython file: ------------------------------------------------------------ ... def _dump_h5_backtrace(): cdef object bt = [] if H5Ewalk(H5E_DEFAULT, H5E_WALK_DOWNWARD, e_walk_cb, bt) < 0: ^ ------------------------------------------------------------ tables/utilsextension.pyx:387:47: Cannot assign type 'herr_t (unsigned int, const H5E_error_t *, void *) except? -1 nogil' to 'H5E_walk_t'. Exception values are incompatible. Suggest adding 'noexcept' to type 'herr_t (unsigned int, const H5E_error_t *, void *) except? -1 nogil'. * Using Python 3.10.13 (main, Nov 30 2023, 05:51:30) [GCC 7.5.0] * Found cython 3.0.6 * USE_PKGCONFIG: True * Found HDF5 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Found LZO 2 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib``. * Found blosc headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. Compiling tables/utilsextension.pyx because it changed. [1/1] Cythonizing tables/utilsextension.pyx Traceback (most recent call last): File "/tmp/math/py-tables/work/tables-3.7.0/setup.py", line 834, in cython_extfiles = get_cython_extfiles(cython_extnames) File "/tmp/math/py-tables/work/tables-3.7.0/setup.py", line 829, in get_cython_extfiles cythonize(str(extpfile), language_level="2") File "/usr/pkg/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize cythonize_one(*args) File "/usr/pkg/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: tables/utilsextension.pyx *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-tables *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-tables