=> Bootstrap dependency digest>=20211023: found digest-20220214
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
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/tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp: In function 'void OpenBabel::StereoRefToImplicit(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref)':
/tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:2973:16: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
     const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_atomId = std::bind1st (equal_to<OBStereo::Ref>(), atomId);
                ^~~~~~~~~
In file included from /usr/include/g++/bits/stl_function.h:1127:0,
                 from /usr/include/g++/bits/stl_tree.h:65,
                 from /usr/include/g++/map:60,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/base.h:26,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/stereo.h:27,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetranonplanar.h:27,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetrahedral.h:27,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:26:
/usr/include/g++/backward/binders.h:108:11: note: declared here
     class binder1st
           ^~~~~~~~~
/tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp: In function 'void OpenBabel::ImplicitRefToStereo(OpenBabel::OBMol&, OpenBabel::OBStereo::Ref, OpenBabel::OBStereo::Ref)':
/tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:3005:16: warning: 'template<class _Operation> class std::binder1st' is deprecated [-Wdeprecated-declarations]
     const std::binder1st<std::equal_to<OBStereo::Ref> > equal_to_implicitRef = std::bind1st (equal_to<OBStereo::Ref>(), (OBStereo::Ref) OBStereo::ImplicitRef);
                ^~~~~~~~~
In file included from /usr/include/g++/bits/stl_function.h:1127:0,
                 from /usr/include/g++/bits/stl_tree.h:65,
                 from /usr/include/g++/map:60,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/base.h:26,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/stereo.h:27,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetranonplanar.h:27,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/include/openbabel/stereo/tetrahedral.h:27,
                 from /tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/stereo/perception.cpp:26:
/usr/include/g++/backward/binders.h:108:11: note: declared here
     class binder1st
           ^~~~~~~~~
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/tmp/biology/openbabel/work/openbabel-openbabel-3-1-1/src/ops/opisomorph.cpp:401:1: internal compiler error: Segmentation fault
 }//namespace
 ^
no stack trace because unwind library not available
Please submit a full bug report,
with preprocessed source if appropriate.
See <http://www.NetBSD.org/support/send-pr.html> for instructions.
--- src/CMakeFiles/plugin_ops.dir/ops/opisomorph.cpp.o ---
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--- src/formats/CMakeFiles/MNAformat.dir/all ---
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*** Error code 2

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