=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py312-biopython-1.79 (cd /tmp/biology/py-biopython/work/biopython-1.79/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\ DL_LDFLAGS=\ -pthread DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.12 CC=gcc CFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include/python3.12\ -I/usr/pkg/include CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/include\ -I/usr/pkg/include/python3.12\ -I/usr/pkg/include CXX=c++ CXXFLAGS=-O2\ -I/usr/include\ -I/usr/pkg/include/python3.12\ -I/usr/pkg/include COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-Wl,-zrelro\ -L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib LINKER_RPATH_FLAG=-R PATH=/tmp/biology/py-biopython/work/.cwrapper/bin:/tmp/biology/py-biopython/work/.buildlink/bin:/tmp/biology/py-biopython/work/.gcc/bin:/tmp/biology/py-biopython/work/.tools/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/pkg/bin:/usr/X11R7/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/tmp/biology/py-biopython/work/.home CWRAPPERS_CONFIG_DIR=/tmp/biology/py-biopython/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/X11R7 PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 775 INSTALL_INFO= MAKEINFO=/tmp/biology/py-biopython/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/tmp/biology/py-biopython/work/.tools/bin/itstool GDBUS_CODEGEN=/tmp/biology/py-biopython/work/.tools/bin/gdbus-codegen PKG_CONFIG=/tmp/biology/py-biopython/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/tmp/biology/py-biopython/work/.buildlink/lib/pkgconfig:/tmp/biology/py-biopython/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/tmp/biology/py-biopython/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/tmp/biology/py-biopython/work/.cwrapper/config /usr/pkg/bin/python3.12 setup.py build -j4) running build running build_py creating build creating build/lib.netbsd-9.3-amd64-cpython-312 creating build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/File.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/LogisticRegression.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/MarkovModel.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/MaxEntropy.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/NaiveBayes.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/Seq.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/SeqFeature.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/SeqRecord.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/_utils.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/bgzf.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/kNN.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/pairwise2.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Affy copying Bio/Affy/CelFile.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Affy copying Bio/Affy/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Affy creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align copying Bio/Align/AlignInfo.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align copying Bio/Align/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_ClustalOmega.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_Clustalw.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_Dialign.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_MSAProbs.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_Mafft.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_Muscle.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_Prank.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_Probcons.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/_TCoffee.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications copying Bio/Align/Applications/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/Applications creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices copying Bio/Align/substitution_matrices/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/ClustalIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/EmbossIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/FastaIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/Interfaces.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/MafIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/MauveIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/MsfIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/NexusIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/PhylipIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/StockholmIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO copying Bio/AlignIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/AlignIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Alphabet copying Bio/Alphabet/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Alphabet creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Application copying Bio/Application/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Application creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast copying Bio/Blast/Applications.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast copying Bio/Blast/NCBIWWW.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast copying Bio/Blast/NCBIXML.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast copying Bio/Blast/ParseBlastTable.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast copying Bio/Blast/Record.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast copying Bio/Blast/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Blast creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/CAPS copying Bio/CAPS/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/CAPS creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Cluster copying Bio/Cluster/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Cluster creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/codonalign copying Bio/codonalign/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/codonalign copying Bio/codonalign/chisq.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/codonalign copying Bio/codonalign/codonalignment.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/codonalign copying Bio/codonalign/codonseq.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/codonalign creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Compass copying Bio/Compass/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Compass creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Data copying Bio/Data/CodonTable.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Data copying Bio/Data/IUPACData.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Data copying Bio/Data/SCOPData.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Data copying Bio/Data/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Data creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Emboss copying Bio/Emboss/Applications.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Emboss copying Bio/Emboss/Primer3.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Emboss copying Bio/Emboss/PrimerSearch.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Emboss copying Bio/Emboss/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Emboss creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez copying Bio/Entrez/Parser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez copying Bio/Entrez/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy copying Bio/ExPASy/Enzyme.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy copying Bio/ExPASy/Prodoc.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy copying Bio/ExPASy/Prosite.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy copying Bio/ExPASy/ScanProsite.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy copying Bio/ExPASy/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy copying Bio/ExPASy/cellosaurus.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/ExPASy creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/GenBank copying Bio/GenBank/Record.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/GenBank copying Bio/GenBank/Scanner.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/GenBank copying Bio/GenBank/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/GenBank copying Bio/GenBank/utils.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/GenBank creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Geo copying Bio/Geo/Record.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Geo copying Bio/Geo/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Geo creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/BasicChromosome.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/ColorSpiral.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/Comparative.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/DisplayRepresentation.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/Distribution.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/KGML_vis.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics copying Bio/Graphics/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_AbstractDrawer.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CircularDrawer.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Colors.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_CrossLink.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Diagram.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Feature.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_FeatureSet.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Graph.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_GraphSet.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_LinearDrawer.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/_Track.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram copying Bio/Graphics/GenomeDiagram/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Graphics/GenomeDiagram creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/HMM copying Bio/HMM/DynamicProgramming.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/HMM copying Bio/HMM/MarkovModel.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/HMM copying Bio/HMM/Trainer.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/HMM copying Bio/HMM/Utilities.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/HMM copying Bio/HMM/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/HMM creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG copying Bio/KEGG/REST.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG copying Bio/KEGG/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Compound copying Bio/KEGG/Compound/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Compound creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Enzyme copying Bio/KEGG/Enzyme/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Enzyme creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Gene copying Bio/KEGG/Gene/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Gene creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Map copying Bio/KEGG/Map/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/Map creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/mmtf copying Bio/PDB/mmtf/DefaultParser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/mmtf copying Bio/PDB/mmtf/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/mmtf copying Bio/PDB/mmtf/mmtfio.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/mmtf creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_parser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/KGML copying Bio/KEGG/KGML/KGML_pathway.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/KGML copying Bio/KEGG/KGML/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/KEGG/KGML creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Medline copying Bio/Medline/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Medline creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/alignace.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/clusterbuster.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/mast.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/matrix.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/meme.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/minimal.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/pfm.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/thresholds.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/transfac.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/motifs/xms.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs/applications copying Bio/motifs/applications/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs/applications copying Bio/motifs/applications/_xxmotif.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs/applications creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs/jaspar copying Bio/motifs/jaspar/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs/jaspar copying Bio/motifs/jaspar/db.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs/jaspar creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus copying Bio/Nexus/Nexus.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus copying Bio/Nexus/Nodes.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus copying Bio/Nexus/StandardData.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus copying Bio/Nexus/Trees.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus copying Bio/Nexus/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/NMR copying Bio/NMR/NOEtools.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/NMR copying Bio/NMR/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/NMR copying Bio/NMR/xpktools.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/NMR creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Pathway copying Bio/Pathway/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Pathway creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Pathway/Rep copying Bio/Pathway/Rep/Graph.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Pathway/Rep copying Bio/Pathway/Rep/MultiGraph.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Pathway/Rep copying Bio/Pathway/Rep/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Pathway/Rep copying Bio/PDB/AbstractPropertyMap.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Atom.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Chain.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/DSSP.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Dice.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Entity.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/FragmentMapper.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/HSExposure.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/MMCIF2Dict.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/MMCIFParser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Model.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/NACCESS.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/NeighborSearch.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/PDBExceptions.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/PDBIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/PDBList.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/PDBParser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/PICIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/PSEA.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Polypeptide.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Residue.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/ResidueDepth.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/SASA.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/SCADIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Selection.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Structure.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/StructureAlignment.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/StructureBuilder.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/Superimposer.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/ic_data.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/ic_rebuild.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/internal_coords.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/mmcifio.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/parse_pdb_header.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/PDB/vectors.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/phenotype copying Bio/phenotype/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/phenotype copying Bio/phenotype/phen_micro.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/phenotype copying Bio/phenotype/pm_fitting.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/phenotype creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen copying Bio/PopGen/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/Controller.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/EasyController.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/FileParser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/LargeFileParser.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen/GenePop copying Bio/PopGen/GenePop/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PopGen/GenePop creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Restriction copying Bio/Restriction/PrintFormat.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Restriction copying Bio/Restriction/Restriction.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Restriction copying Bio/Restriction/Restriction_Dictionary.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Restriction copying Bio/Restriction/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Restriction creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/Cla.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/Des.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/Dom.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/Hie.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/Raf.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/Residues.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP copying Bio/SCOP/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SCOP creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO copying Bio/SearchIO/BlatIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO copying Bio/SearchIO/FastaIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO copying Bio/SearchIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO copying Bio/SearchIO/_index.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO copying Bio/SearchIO/_utils.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/NCBIStandalone.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/ParserSupport.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_legacy copying Bio/SearchIO/_legacy/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_legacy creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_model copying Bio/SearchIO/_model/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_model copying Bio/SearchIO/_model/_base.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_model copying Bio/SearchIO/_model/hit.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_model copying Bio/SearchIO/_model/hsp.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_model copying Bio/SearchIO/_model/query.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/_model creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_tab.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_text.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/BlastIO copying Bio/SearchIO/BlastIO/blast_xml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/BlastIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HHsuiteIO copying Bio/SearchIO/HHsuiteIO/hhsuite2_text.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HHsuiteIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/_base.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer2_text.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_domtab.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_tab.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO copying Bio/SearchIO/HmmerIO/hmmer3_text.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/HmmerIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/_base.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_cigar.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_text.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/ExonerateIO copying Bio/SearchIO/ExonerateIO/exonerate_vulgar.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/ExonerateIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/InterproscanIO copying Bio/SearchIO/InterproscanIO/interproscan_xml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SearchIO/InterproscanIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/AbiIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/AceIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/FastaIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/GckIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/IgIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/InsdcIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/Interfaces.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/NibIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/PdbIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/PhdIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/PirIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/QualityIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/SeqXmlIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/SffIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/SnapGeneIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/SwissIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/TabIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/TwoBitIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/UniprotIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/XdnaIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/SeqIO/_index.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/CheckSum.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/CodonUsage.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/CodonUsageIndices.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/IsoelectricPoint.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/MeltingTemp.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/ProtParam.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/ProtParamData.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils copying Bio/SeqUtils/lcc.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqUtils creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing copying Bio/Sequencing/Ace.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing copying Bio/Sequencing/Phd.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing copying Bio/Sequencing/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_Novoalign.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_bwa.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing/Applications copying Bio/Sequencing/Applications/_samtools.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Sequencing/Applications creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SubsMat copying Bio/SubsMat/FreqTable.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SubsMat copying Bio/SubsMat/MatrixInfo.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SubsMat copying Bio/SubsMat/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SubsMat creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SVDSuperimposer copying Bio/SVDSuperimposer/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SVDSuperimposer creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/QCPSuperimposer copying Bio/PDB/QCPSuperimposer/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/QCPSuperimposer creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/SwissProt copying Bio/SwissProt/KeyWList.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SwissProt copying Bio/SwissProt/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SwissProt creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/TogoWS copying Bio/TogoWS/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/TogoWS creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/BaseTree.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/CDAO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/CDAOIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/Consensus.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/NeXML.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/NeXMLIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/Newick.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/NewickIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/NexusIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/PhyloXML.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/PhyloXMLIO.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/TreeConstruction.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/_cdao_owl.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/_io.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo copying Bio/Phylo/_utils.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Fasttree.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Phyml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/Applications copying Bio/Phylo/Applications/_Raxml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/Applications copying Bio/Phylo/Applications/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/Applications creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/_paml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_baseml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_codeml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/_parse_yn00.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/baseml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/chi2.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/codeml.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML copying Bio/Phylo/PAML/yn00.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Phylo/PAML creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/UniGene copying Bio/UniGene/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/UniGene creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/UniProt copying Bio/UniProt/GOA.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/UniProt copying Bio/UniProt/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/UniProt creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Wise copying Bio/Wise/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Wise copying Bio/Wise/dnal.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Wise copying Bio/Wise/psw.py -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Wise creating build/lib.netbsd-9.3-amd64-cpython-312/BioSQL copying BioSQL/BioSeq.py -> build/lib.netbsd-9.3-amd64-cpython-312/BioSQL copying BioSQL/BioSeqDatabase.py -> build/lib.netbsd-9.3-amd64-cpython-312/BioSQL copying BioSQL/DBUtils.py -> build/lib.netbsd-9.3-amd64-cpython-312/BioSQL copying BioSQL/Loader.py -> build/lib.netbsd-9.3-amd64-cpython-312/BioSQL copying BioSQL/__init__.py -> build/lib.netbsd-9.3-amd64-cpython-312/BioSQL running egg_info writing biopython.egg-info/PKG-INFO writing dependency_links to biopython.egg-info/dependency_links.txt writing requirements to biopython.egg-info/requires.txt writing top-level names to biopython.egg-info/top_level.txt reading manifest file 'biopython.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'Tests/Gck/DGVC_GCK.zip' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '*.py{}' found anywhere in distribution warning: no previously-included files matching '*.py-e' found anywhere in distribution warning: no previously-included files found matching 'Bio/Align/substitution_matrices/data/README.txt' adding license file 'LICENSE.rst' writing manifest file 'biopython.egg-info/SOURCES.txt' /usr/pkg/lib/python3.12/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Align.substitution_matrices.data' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Align.substitution_matrices.data' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Align.substitution_matrices.data' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Align.substitution_matrices.data' to be distributed and are already explicitly excluding 'Bio.Align.substitution_matrices.data' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/pkg/lib/python3.12/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.DTDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.DTDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.DTDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.DTDs' to be distributed and are already explicitly excluding 'Bio.Entrez.DTDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/pkg/lib/python3.12/site-packages/setuptools/command/build_py.py:204: _Warning: Package 'Bio.Entrez.XSDs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'Bio.Entrez.XSDs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'Bio.Entrez.XSDs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'Bio.Entrez.XSDs' to be distributed and are already explicitly excluding 'Bio.Entrez.XSDs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying Bio/cpairwise2module.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio copying Bio/Align/_aligners.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER22 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER6 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BENNER74 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM45 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM50 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM62 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM80 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/BLOSUM90 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/DAYHOFF -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/FENG -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GENETIC -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/GONNET1992 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/HOXD70 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JOHNSON -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/JONES -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/LEVIN -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MCLACHLAN -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/MDM78 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/NUC.4.4 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM250 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM30 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/PAM70 -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RAO -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/RISLER -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/SCHNEIDER -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/STR -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Align/substitution_matrices/data/TRANS -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Align/substitution_matrices/data copying Bio/Cluster/cluster.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Cluster copying Bio/Cluster/cluster.h -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Cluster copying Bio/Cluster/clustermodule.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Cluster creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_0.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_1.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_2.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_3.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/Docsum_3_4.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/EMBL_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/GenBank_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/HomoloGene.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/INSD_INSDSeq.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Chemical_graph.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Features.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/MMDB_Structural_model.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Access.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Biblio.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioSource.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BioTree.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Blast4.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastDL.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_BlastOutput.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cdd.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Cn3d.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entity.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrez2.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Entrezgene.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_FeatDef.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_GBSeq.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Gene.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID1Access.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ID2Access.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_MedArchive.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medlars.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Medline.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mim.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Mime.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ObjPrt.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Organism.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCAssay.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PCSubstance.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Project.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Protein.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Pub.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_PubMed.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_RNA.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Remap.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Rsite.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_ScoreMat.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqCode.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_SeqTable.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seq_split.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqalign.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqfeat.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqloc.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqres.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Seqset.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Sequence.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Submit.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Systems.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TSeq.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_TxInit.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_Variation.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NCBI_all.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/NSE.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/OMSSA.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PDB_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PIR_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/PRF_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/SP_General.mod.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/XHTMLtablesetup.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivearticle.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-classes.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-mixes.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-models.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/archivecustom-modules.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/articlemeta.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/backmatter.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_100301.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_110101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_120101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_130101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_140101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/bookdoc_150101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/chars.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/common.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-classes.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/default-mixes.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/display.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eInfo_020511.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_090910.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eLink_101123.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/ePost_020511.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSearch_020511.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSpell.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/eSummary_041029.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/egquery.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/einfo.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/elink_020122.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esearch.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/esummary-v1.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/format.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/htmltable.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsa.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsb.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsc.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsn.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamso.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isoamsr.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isobox.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr1.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isocyr2.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isodia.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk1.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk2.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk3.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isogrk4.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat1.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isolat2.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomfrk.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomopf.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isomscr.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isonum.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isopub.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/isotech.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/journalmeta.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/link.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/list.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/math.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml-in-pubmed.mod -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2-qname-1.mod -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml2.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3-qname1.mod -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathml3.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mathmlsetup.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlalias.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/mmlextra.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/modules.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlm-articleset-2.0.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcatalogrecordset_170601.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_011101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_080101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmcommon_090101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_011101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_080101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedline_090101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_011101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_080101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitation_090101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_100301.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_110101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_120101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_130501.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_140101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmmedlinecitationset_150101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_080101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmserials_100101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_080101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/nlmsharedcatcit_090101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/notat.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/para.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/phrase.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pmc-1.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_020114.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_080101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_090101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_100301.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_110101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_120101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_130501.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_140101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_150101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_180601.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/pubmed_190101.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/references.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/section.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/taxon.dtd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs copying Bio/Entrez/DTDs/xmlspecchars.ent -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/DTDs creating build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/XSDs copying Bio/Entrez/XSDs/IPGReportSet.xsd -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Entrez/XSDs copying Bio/motifs/_pwm.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/motifs copying Bio/Nexus/cnexus.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/Nexus copying Bio/PDB/kdtrees.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB copying Bio/SeqIO/_twoBitIO.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/SeqIO copying Bio/PDB/QCPSuperimposer/qcprotmodule.c -> build/lib.netbsd-9.3-amd64-cpython-312/Bio/PDB/QCPSuperimposer running build_ext building 'Bio.Align._aligners' extension creating build/temp.netbsd-9.3-amd64-cpython-312 creating build/temp.netbsd-9.3-amd64-cpython-312/Bio creating build/temp.netbsd-9.3-amd64-cpython-312/Bio/Align gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include -O2 -I/usr/include -I/usr/pkg/include/python3.12 -I/usr/pkg/include -I/usr/pkg/include/netlib -I/usr/include -I/usr/pkg/include/python3.12 -I/usr/pkg/include -fPIC -I/usr/pkg/include/python3.12 -c Bio/Align/_aligners.c -o build/temp.netbsd-9.3-amd64-cpython-312/Bio/Align/_aligners.o Bio/Align/_aligners.c: In function 'set_alphabet': Bio/Align/_aligners.c:1786:18: error: 'PyUnicode_WCHAR_KIND' undeclared (first use in this function); did you mean 'PyUnicode_4BYTE_KIND'? case PyUnicode_WCHAR_KIND: ^~~~~~~~~~~~~~~~~~~~ PyUnicode_4BYTE_KIND Bio/Align/_aligners.c:1786:18: note: each undeclared identifier is reported only once for each function it appears in Bio/Align/_aligners.c: In function 'sequence_converter': Bio/Align/_aligners.c:6664:18: error: 'PyUnicode_WCHAR_KIND' undeclared (first use in this function); did you mean 'PyUnicode_4BYTE_KIND'? case PyUnicode_WCHAR_KIND: ^~~~~~~~~~~~~~~~~~~~ PyUnicode_4BYTE_KIND error: command '/tmp/biology/py-biopython/work/.cwrapper/bin/gcc' failed with exit code 1 *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/biology/py-biopython *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/biology/py-biopython