=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for scipy-1.11.2.tar.gz => Checksum SHA512 OK for scipy-1.11.2.tar.gz ===> Installing dependencies for py310-scipy-1.11.2 ========================================================================== The following variables will affect the build process of this package, py310-scipy-1.11.2. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 311 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas * PYPACKAGE = python310 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py310-cython>=0.29.35: found py310-cython-0.29.36 => Tool dependency meson>=1.1: found meson-1.2.1nb2 => Tool dependency py310-meson_python-[0-9]*: found py310-meson_python-0.13.2 => Tool dependency py310-wheel-[0-9]*: found py310-wheel-0.41.2 => Tool dependency py310-pip>=23.1.2nb1: found py310-pip-23.2.1 => Tool dependency py310-build>=0: found py310-build-0.10.0 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency pkgconf-[0-9]*: found pkgconf-2.0.2 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency gcc8>=8.5.0nb1: found gcc8-8.5.0nb1 => Build dependency py310-pybind11>=2.5.0: found py310-pybind11-2.11.1 => Build dependency py310-pythran>=0.10.0: found py310-pythran-0.13.1 => Full dependency py310-pybind11>=2.10.4: found py310-pybind11-2.11.1 => Full dependency py310-pythran>=0.12.0: found py310-pythran-0.13.1 => Full dependency gcc8-libs>=8.3.0: found gcc8-libs-8.5.0nb1 => Full dependency py310-cython>=0.12.1: found py310-cython-0.29.36 => Full dependency fftw>=3.3.10nb1: found fftw-3.3.10nb1 => Full dependency openblas>=0.3.15nb2: found openblas-0.3.15nb2 => Full dependency py310-numpy>=1.21.6: found py310-numpy-1.25.2 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py310-scipy-1.11.2 ===> Extracting for py310-scipy-1.11.2 ===> Patching for py310-scipy-1.11.2 => Applying pkgsrc patches for py310-scipy-1.11.2 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial___ckdtree.pyx Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial___ckdtree.pyx,v 1.4 2023/07/17 19:39:56 tnn Exp $ | |Fix missing isnan/isinf. |Build breaks on at least NetBSD-10.99.4-aarch64 without this: | |scipy/spatial/_ckdtree.cxx: In function 'PyObject* __pyx_pf_5scipy_7spatial_8_ckdtree_7cKDTree_16count_neighbors(__pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, __pyx_obj_5scipy_7spatial_8_ckdtree_cKDTree*, PyObject*, __pyx_t_5numpy_float64_t, PyObject*, int)': |scipy/spatial/_ckdtree.cxx:13392:19: error: 'isinf' was not declared in this scope; did you mean 'std::isinf'? | |--- scipy/spatial/_ckdtree.pyx.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/spatial/_ckdtree.pyx -------------------------- Patching file scipy/spatial/_ckdtree.pyx using Plan A... Hunk #1 succeeded at 16. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial_ckdtree_src_ckdtree__decl.h,v 1.3 2023/05/05 14:59:25 adam Exp $ | |Many errors like this: |scipy/spatial/ckdtree/src/query_pairs.cxx:110:16: error: argument to '__builtin_prefetch' must be a constant integer | |--- scipy/spatial/ckdtree/src/ckdtree_decl.h.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/spatial/ckdtree/src/ckdtree_decl.h -------------------------- Patching file scipy/spatial/ckdtree/src/ckdtree_decl.h using Plan A... Hunk #1 succeeded at 9. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_Faddeeva.hh Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_Faddeeva.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ | |Fix missing isnan/isinf. | |--- scipy/special/Faddeeva.hh.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/special/Faddeeva.hh -------------------------- Patching file scipy/special/Faddeeva.hh using Plan A... Hunk #1 succeeded at 28. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_sf__error.c => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_sf__error.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_sf__error.c,v 1.1 2023/05/05 14:59:25 adam Exp $ | |Workaround for https://github.com/numpy/numpy/issues/23379 |Add hack here, because sf_error.c is compiled in both _ufuncs.so and _ufuncs_cxx.so. | |--- scipy/special/sf_error.c.orig 2023-05-05 14:40:42.972802223 +0000 |+++ scipy/special/sf_error.c -------------------------- Patching file scipy/special/sf_error.c using Plan A... Hunk #1 succeeded at 5. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special_wright.hh Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special_wright.hh,v 1.1 2023/05/08 20:39:18 tnn Exp $ | |Fix missing isnan/isinf. | |--- scipy/special/wright.hh.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/special/wright.hh -------------------------- Patching file scipy/special/wright.hh using Plan A... Hunk #1 succeeded at 2. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_stats___unuran_meson.build Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_stats___unuran_meson.build,v 1.1 2023/08/26 19:50:01 tnn Exp $ | |On NetBSD/powerpc and evbarm, you can't build with _ISOC99_SOURCE defined, |the include of deep down in the python headers will fail |with undefined types. | |--- scipy/stats/_unuran/meson.build.orig 1970-01-01 00:00:00.000000000 +0000 |+++ scipy/stats/_unuran/meson.build -------------------------- Patching file scipy/stats/_unuran/meson.build using Plan A... Hunk #1 succeeded at 204. done ===> Creating toolchain wrappers for py310-scipy-1.11.2 ===> Configuring for py310-scipy-1.11.2 => Fixing pythran binary name. => Checking for portability problems in extracted files