=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for outpaddling-ncbi-vdb-38972fc.tar.gz => Checksum SHA512 OK for outpaddling-ncbi-vdb-38972fc.tar.gz => Checksum BLAKE2s OK for sra-tools-3.0.6-984f1493e8612cd59a269569bf8c06e25e4e604c.tar.gz => Checksum SHA512 OK for sra-tools-3.0.6-984f1493e8612cd59a269569bf8c06e25e4e604c.tar.gz ===> Installing dependencies for sra-tools-3.0.6 => Tool dependency cmake>=3.18: found cmake-3.27.4 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency bash-[0-9]*: found bash-5.2.15 => Tool dependency bison>=1.0: found bison-3.8.2nb1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Full dependency libepoll-shim>=0.0.20210418: found libepoll-shim-0.0.20230411 => Full dependency libxml2>=2.10.4nb2: found libxml2-2.10.4nb2 => Full dependency hdf5>=1.8.11: found hdf5-1.12.2 => Full dependency zstd>=1.3.6: found zstd-1.5.5 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for sra-tools-3.0.6 ===> Extracting for sra-tools-3.0.6 ===> Patching for sra-tools-3.0.6 => Applying pkgsrc patches for sra-tools-3.0.6 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-build_env.cmake => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-build_env.cmake Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-build_env.cmake,v 1.1 2023/08/29 00:00:25 bacon Exp $ | |# static standard libs are not standard nor easy to install on Alma Linux | |--- build/env.cmake.orig 2023-08-13 18:06:02.445968665 +0000 |+++ build/env.cmake -------------------------- Patching file build/env.cmake using Plan A... Hunk #1 succeeded at 555. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-ncbi-vdb_libs_kproc_bsd_sysmgr.c => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-ncbi-vdb_libs_kproc_bsd_sysmgr.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ncbi-vdb_libs_kproc_bsd_sysmgr.c,v 1.1 2023/08/29 00:00:25 bacon Exp $ | |# Add NetBSD pthread_main_np() stand-in | |--- ncbi-vdb/libs/kproc/bsd/sysmgr.c.orig 2023-08-15 12:41:59.000000000 +0000 |+++ ncbi-vdb/libs/kproc/bsd/sysmgr.c -------------------------- Patching file ncbi-vdb/libs/kproc/bsd/sysmgr.c using Plan A... Hunk #1 succeeded at 30. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-ngs_ngs-java_CMakeLists.txt => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-ngs_ngs-java_CMakeLists.txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-ngs_ngs-java_CMakeLists.txt,v 1.1 2023/08/29 00:00:25 bacon Exp $ | |# Disable java | |--- ngs/ngs-java/CMakeLists.txt.orig 2023-08-13 21:46:05.343038455 +0000 |+++ ngs/ngs-java/CMakeLists.txt -------------------------- Patching file ngs/ngs-java/CMakeLists.txt using Plan A... Hunk #1 succeeded at 99. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-tools_external_driver-tool_sratools.cpp => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/sra-tools/patches/patch-tools_external_driver-tool_sratools.cpp Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-tools_external_driver-tool_sratools.cpp,v 1.1 2023/08/29 00:00:25 bacon Exp $ | |# Add NetBSD pthread_main_np() stand-in | |--- tools/external/driver-tool/sratools.cpp.orig 2023-08-15 12:51:29.845642918 +0000 |+++ tools/external/driver-tool/sratools.cpp -------------------------- Patching file tools/external/driver-tool/sratools.cpp using Plan A... Hunk #1 succeeded at 578. done ===> Creating toolchain wrappers for sra-tools-3.0.6 ===> Configuring for sra-tools-3.0.6 => Substituting "binpath" in tools/external/driver-tool/file-path.posix.cpp => Substituting "etcdir" in ncbi-vdb/libs/kfg/config.c => Substituting "submoddir" in CMakeLists.txt /bin/rm -f /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64/byteswap.h cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && cmake -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON .. -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /tmp/biology/sra-tools/work/.cwrapper/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /tmp/biology/sra-tools/work/.cwrapper/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done VERSION=3.0.6 -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") -- Found BISON: /tmp/biology/sra-tools/work/.tools/bin/bison (found suitable version "3.8.2", minimum required is "3") -- Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter) -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) RUN_SANITIZER_TESTS: OFF Using local mbedtls headers from interfaces/ext/mbedtls Building local copy ext/mbedtls... -- Looking for gnu/libc-version.h -- Looking for gnu/libc-version.h - not found No mbedtls libs found installed in the system, using local copy... -- Configuring done (3.6s) -- Generating done (1.3s) -- Build files have been written to: /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/bin/make /usr/pkg/bin/cmake -S/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb -B/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/pkg/bin/cmake -E cmake_progress_start /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/CMakeFiles /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f libs/ktst/CMakeFiles/ktst.dir/build.make libs/ktst/CMakeFiles/ktst.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst/CMakeFiles/ktst.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/ktst/CMakeFiles/ktst.dir/build.make libs/ktst/CMakeFiles/ktst.dir/build [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -MD -MT libs/ktst/CMakeFiles/ktst.dir/testenv.cpp.o -MF CMakeFiles/ktst.dir/testenv.cpp.o.d -o CMakeFiles/ktst.dir/testenv.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testenv.cpp [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testcase.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -MD -MT libs/ktst/CMakeFiles/ktst.dir/testcase.cpp.o -MF CMakeFiles/ktst.dir/testcase.cpp.o.d -o CMakeFiles/ktst.dir/testcase.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testcase.cpp [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -MD -MT libs/ktst/CMakeFiles/ktst.dir/testrunner.cpp.o -MF CMakeFiles/ktst.dir/testrunner.cpp.o.d -o CMakeFiles/ktst.dir/testrunner.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/testrunner.cpp [ 0%] Building CXX object libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ktst\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -MD -MT libs/ktst/CMakeFiles/ktst.dir/unix/systestenv.cpp.o -MF CMakeFiles/ktst.dir/unix/systestenv.cpp.o.d -o CMakeFiles/ktst.dir/unix/systestenv.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ktst/unix/systestenv.cpp [ 0%] Linking CXX static library ../../lib/libktst.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /usr/pkg/bin/cmake -P CMakeFiles/ktst.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ktst && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/ktst.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libktst.a CMakeFiles/ktst.dir/testenv.cpp.o CMakeFiles/ktst.dir/testcase.cpp.o CMakeFiles/ktst.dir/testrunner.cpp.o CMakeFiles/ktst.dir/unix/systestenv.cpp.o /usr/bin/ranlib ../../lib/libktst.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libktst.a.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libktst.a libktst.a.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libktst.a.3.0.6 libktst.a.3 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libktst.a.3 libktst.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libktst.a libktst-static.a [ 0%] Built target ktst /usr/bin/make -f libs/align/CMakeFiles/ncbi-bam.dir/build.make libs/align/CMakeFiles/ncbi-bam.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/ncbi-bam.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/align/CMakeFiles/ncbi-bam.dir/build.make libs/align/CMakeFiles/ncbi-bam.dir/build [ 0%] Building C object libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/ncbi-bam.dir/bam.c.o -MF CMakeFiles/ncbi-bam.dir/bam.c.o.d -o CMakeFiles/ncbi-bam.dir/bam.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/bam.c [ 0%] Linking C static library ../../ilib/libncbi-bam.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/ncbi-bam.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/ncbi-bam.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libncbi-bam.a "CMakeFiles/ncbi-bam.dir/bam.c.o" /usr/bin/ranlib ../../ilib/libncbi-bam.a [ 0%] Built target ncbi-bam /usr/bin/make -f libs/align/CMakeFiles/align-writer.dir/build.make libs/align/CMakeFiles/align-writer.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/align-writer.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/align/CMakeFiles/align-writer.dir/build.make libs/align/CMakeFiles/align-writer.dir/build [ 0%] Building C object libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o -MF CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o.d -o CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/dna-reverse-cmpl.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-cmn.c.o -MF CMakeFiles/align-writer.dir/reader-cmn.c.o.d -o CMakeFiles/align-writer.dir/reader-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-cmn.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/reference-cmn.c.o -MF CMakeFiles/align-writer.dir/reference-cmn.c.o.d -o CMakeFiles/align-writer.dir/reference-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference-cmn.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-refseq.c.o -MF CMakeFiles/align-writer.dir/reader-refseq.c.o.d -o CMakeFiles/align-writer.dir/reader-refseq.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-refseq.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/reader-wgs.c.o -MF CMakeFiles/align-writer.dir/reader-wgs.c.o.d -o CMakeFiles/align-writer.dir/reader-wgs.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-wgs.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/refseq-mgr.c.o -MF CMakeFiles/align-writer.dir/refseq-mgr.c.o.d -o CMakeFiles/align-writer.dir/refseq-mgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/refseq-mgr.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-cmn.c.o -MF CMakeFiles/align-writer.dir/writer-cmn.c.o.d -o CMakeFiles/align-writer.dir/writer-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-cmn.c [ 1%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-refseq.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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Building C object libs/align/CMakeFiles/align-writer.dir/writer-alignment.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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-std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-writer.dir/writer-ref.c.o -MF CMakeFiles/align-writer.dir/writer-ref.c.o.d -o CMakeFiles/align-writer.dir/writer-ref.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/writer-ref.c [ 2%] Building C object libs/align/CMakeFiles/align-writer.dir/writer-reference.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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2%] Linking C static library ../../ilib/libalign-writer.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/align-writer.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/align-writer.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libalign-writer.a "CMakeFiles/align-writer.dir/dna-reverse-cmpl.c.o" "CMakeFiles/align-writer.dir/reader-cmn.c.o" "CMakeFiles/align-writer.dir/reference-cmn.c.o" "CMakeFiles/align-writer.dir/reader-refseq.c.o" "CMakeFiles/align-writer.dir/reader-wgs.c.o" "CMakeFiles/align-writer.dir/refseq-mgr.c.o" "CMakeFiles/align-writer.dir/writer-cmn.c.o" "CMakeFiles/align-writer.dir/writer-refseq.c.o" "CMakeFiles/align-writer.dir/writer-alignment.c.o" "CMakeFiles/align-writer.dir/writer-sequence.c.o" 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-f libs/align/CMakeFiles/align-access.dir/build.make libs/align/CMakeFiles/align-access.dir/build [ 2%] Building C object libs/align/CMakeFiles/align-access.dir/align-access.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-access.dir/align-access.c.o -MF CMakeFiles/align-access.dir/align-access.c.o.d -o CMakeFiles/align-access.dir/align-access.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/align-access.c [ 2%] Linking C static library ../../ilib/libalign-access.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/align-access.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/align-access.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libalign-access.a "CMakeFiles/align-access.dir/align-access.c.o" /usr/bin/ranlib ../../ilib/libalign-access.a [ 2%] Built target align-access /usr/bin/make -f libs/align/CMakeFiles/sam-extract.dir/build.make libs/align/CMakeFiles/sam-extract.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/sam-extract.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/align/CMakeFiles/sam-extract.dir/build.make libs/align/CMakeFiles/sam-extract.dir/build [ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o -MF CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o.d -o CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/zz_samextract-grammar.c [ 2%] Building C object libs/align/CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/zz_samextract-lex.c [ 2%] Building CXX object libs/align/CMakeFiles/sam-extract.dir/samextract-lib.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-bam.cpp.o -MF CMakeFiles/sam-extract.dir/samextract-bam.cpp.o.d -o CMakeFiles/sam-extract.dir/samextract-bam.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-bam.cpp [ 3%] Building C object libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/sam-extract.dir/samextract-pool.c.o -MF CMakeFiles/sam-extract.dir/samextract-pool.c.o.d -o CMakeFiles/sam-extract.dir/samextract-pool.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/samextract-pool.c [ 3%] Linking CXX static library ../../lib/libsam-extract.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/sam-extract.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/sam-extract.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libsam-extract.a "CMakeFiles/sam-extract.dir/zz_samextract-grammar.c.o" "CMakeFiles/sam-extract.dir/zz_samextract-lex.c.o" "CMakeFiles/sam-extract.dir/samextract-lib.cpp.o" "CMakeFiles/sam-extract.dir/samextract-bam.cpp.o" "CMakeFiles/sam-extract.dir/samextract-pool.c.o" /usr/bin/ranlib ../../lib/libsam-extract.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libsam-extract.a.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libsam-extract.a libsam-extract.a.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libsam-extract.a.3.0.6 libsam-extract.a.3 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libsam-extract.a.3 libsam-extract.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libsam-extract.a libsam-extract-static.a [ 3%] Built target sam-extract /usr/bin/make -f libs/align/CMakeFiles/align-reader.dir/build.make libs/align/CMakeFiles/align-reader.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align/CMakeFiles/align-reader.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/align/CMakeFiles/align-reader.dir/build.make libs/align/CMakeFiles/align-reader.dir/build [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/align_mgr.c.o -MF CMakeFiles/align-reader.dir/align_mgr.c.o.d -o CMakeFiles/align-reader.dir/align_mgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/align_mgr.c [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/al_iterator.c.o -MF CMakeFiles/align-reader.dir/al_iterator.c.o.d -o CMakeFiles/align-reader.dir/al_iterator.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/al_iterator.c [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o -MF CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o.d -o CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/unsupported_pileup_estimator.c [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/ref_iterator.c.o -MF CMakeFiles/align-reader.dir/ref_iterator.c.o.d -o CMakeFiles/align-reader.dir/ref_iterator.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/ref_iterator.c [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/pl_iterator.c.o -MF CMakeFiles/align-reader.dir/pl_iterator.c.o.d -o CMakeFiles/align-reader.dir/pl_iterator.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/pl_iterator.c [ 3%] Building C object libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o -MF CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o.d -o CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/dna-reverse-cmpl.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/reference-cmn.c.o -MF CMakeFiles/align-reader.dir/reference-cmn.c.o.d -o CMakeFiles/align-reader.dir/reference-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference-cmn.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-cmn.c.o -MF CMakeFiles/align-reader.dir/reader-cmn.c.o.d -o CMakeFiles/align-reader.dir/reader-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-cmn.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-refseq.c.o -MF CMakeFiles/align-reader.dir/reader-refseq.c.o.d -o CMakeFiles/align-reader.dir/reader-refseq.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-refseq.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/reader-wgs.c.o -MF CMakeFiles/align-reader.dir/reader-wgs.c.o.d -o CMakeFiles/align-reader.dir/reader-wgs.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reader-wgs.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/reference.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/reference.c.o -MF CMakeFiles/align-reader.dir/reference.c.o.d -o CMakeFiles/align-reader.dir/reference.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/reference.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/refseq-mgr.c.o -MF CMakeFiles/align-reader.dir/refseq-mgr.c.o.d -o CMakeFiles/align-reader.dir/refseq-mgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/refseq-mgr.c [ 4%] Building C object libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/align\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/align/CMakeFiles/align-reader.dir/quality-quantizer.c.o -MF CMakeFiles/align-reader.dir/quality-quantizer.c.o.d -o CMakeFiles/align-reader.dir/quality-quantizer.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/align/quality-quantizer.c [ 4%] Linking C static library ../../ilib/libalign-reader.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -P CMakeFiles/align-reader.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/align && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/align-reader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libalign-reader.a "CMakeFiles/align-reader.dir/align_mgr.c.o" "CMakeFiles/align-reader.dir/al_iterator.c.o" "CMakeFiles/align-reader.dir/unsupported_pileup_estimator.c.o" "CMakeFiles/align-reader.dir/ref_iterator.c.o" "CMakeFiles/align-reader.dir/pl_iterator.c.o" "CMakeFiles/align-reader.dir/dna-reverse-cmpl.c.o" "CMakeFiles/align-reader.dir/reference-cmn.c.o" "CMakeFiles/align-reader.dir/reader-cmn.c.o" "CMakeFiles/align-reader.dir/reader-refseq.c.o" "CMakeFiles/align-reader.dir/reader-wgs.c.o" "CMakeFiles/align-reader.dir/reference.c.o" "CMakeFiles/align-reader.dir/refseq-mgr.c.o" "CMakeFiles/align-reader.dir/quality-quantizer.c.o" /usr/bin/ranlib ../../ilib/libalign-reader.a [ 4%] Built target align-reader /usr/bin/make -f libs/axf/CMakeFiles/axf.dir/build.make libs/axf/CMakeFiles/axf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf/CMakeFiles/axf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/axf/CMakeFiles/axf.dir/build.make libs/axf/CMakeFiles/axf.dir/build [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/ref-tbl-sub-select.c.o -MF CMakeFiles/axf.dir/ref-tbl-sub-select.c.o.d -o CMakeFiles/axf.dir/ref-tbl-sub-select.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl-sub-select.c [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/ref-restore-read.c.o -MF CMakeFiles/axf.dir/ref-restore-read.c.o.d -o CMakeFiles/axf.dir/ref-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-restore-read.c [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/align-restore-read.c.o -MF CMakeFiles/axf.dir/align-restore-read.c.o.d -o CMakeFiles/axf.dir/align-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-restore-read.c [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/raw-restore-read.c.o -MF CMakeFiles/axf.dir/raw-restore-read.c.o.d -o CMakeFiles/axf.dir/raw-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-read.c [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/raw-restore-qual.c.o -MF CMakeFiles/axf.dir/raw-restore-qual.c.o.d -o CMakeFiles/axf.dir/raw-restore-qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-qual.c [ 4%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/seq-restore-read.c.o -MF CMakeFiles/axf.dir/seq-restore-read.c.o.d -o CMakeFiles/axf.dir/seq-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-read.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/seq-restore-linkage-group.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/seq-restore-linkage-group.c.o -MF CMakeFiles/axf.dir/seq-restore-linkage-group.c.o.d -o CMakeFiles/axf.dir/seq-restore-linkage-group.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-linkage-group.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/seq-construct-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/seq-construct-read.c.o -MF CMakeFiles/axf.dir/seq-construct-read.c.o.d -o CMakeFiles/axf.dir/seq-construct-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-construct-read.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/cigar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/cigar.c.o -MF CMakeFiles/axf.dir/cigar.c.o.d -o CMakeFiles/axf.dir/cigar.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/cigar.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/project_read_from_sequence.c.o -MF CMakeFiles/axf.dir/project_read_from_sequence.c.o.d -o CMakeFiles/axf.dir/project_read_from_sequence.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/project_read_from_sequence.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/not-my-row.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/not-my-row.c.o -MF CMakeFiles/axf.dir/not-my-row.c.o.d -o CMakeFiles/axf.dir/not-my-row.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/not-my-row.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/template-len.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/template-len.c.o -MF CMakeFiles/axf.dir/template-len.c.o.d -o CMakeFiles/axf.dir/template-len.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/template-len.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/get-sam-flags.c.o -MF CMakeFiles/axf.dir/get-sam-flags.c.o.d -o CMakeFiles/axf.dir/get-sam-flags.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get-sam-flags.c [ 5%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-pos.c.o -MF CMakeFiles/axf.dir/align-ref-pos.c.o.d -o CMakeFiles/axf.dir/align-ref-pos.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-pos.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/align-ref-name.c.o -MF CMakeFiles/axf.dir/align-ref-name.c.o.d -o CMakeFiles/axf.dir/align-ref-name.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-name.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/align-ref-seq-id.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/align-local_ref_id.c.o -MF CMakeFiles/axf.dir/align-local_ref_id.c.o.d -o CMakeFiles/axf.dir/align-local_ref_id.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_id.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/align-local_ref_start.c.o -MF CMakeFiles/axf.dir/align-local_ref_start.c.o.d -o CMakeFiles/axf.dir/align-local_ref_start.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_start.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/generate-mismatch-qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/generate-mismatch-qual.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/mismatch-restore-qual.c.o -MF CMakeFiles/axf.dir/mismatch-restore-qual.c.o.d -o CMakeFiles/axf.dir/mismatch-restore-qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/mismatch-restore-qual.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/ref-preserve_qual.c.o -MF CMakeFiles/axf.dir/ref-preserve_qual.c.o.d -o CMakeFiles/axf.dir/ref-preserve_qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-preserve_qual.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/ref-tbl.c.o -MF CMakeFiles/axf.dir/ref-tbl.c.o.d -o CMakeFiles/axf.dir/ref-tbl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl.c [ 6%] Building C object libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/make-cmp-read_desc.c.o -MF CMakeFiles/axf.dir/make-cmp-read_desc.c.o.d -o CMakeFiles/axf.dir/make-cmp-read_desc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/make-cmp-read_desc.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/get_mate_align_ids.c.o -MF CMakeFiles/axf.dir/get_mate_align_ids.c.o.d -o CMakeFiles/axf.dir/get_mate_align_ids.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get_mate_align_ids.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/range-list.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/range-list.c.o -MF CMakeFiles/axf.dir/range-list.c.o.d -o CMakeFiles/axf.dir/range-list.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/range-list.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/refseq.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/refseq.c.o -MF CMakeFiles/axf.dir/refseq.c.o.d -o CMakeFiles/axf.dir/refseq.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/wgs.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/wgs.c.o -MF CMakeFiles/axf.dir/wgs.c.o.d -o CMakeFiles/axf.dir/wgs.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/wgs.c [ 7%] Building C object libs/axf/CMakeFiles/axf.dir/restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/axf.dir/restore-read.c.o -MF CMakeFiles/axf.dir/restore-read.c.o.d -o CMakeFiles/axf.dir/restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/restore-read.c [ 7%] Linking C static library ../../ilib/libaxf.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -P CMakeFiles/axf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/axf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libaxf.a "CMakeFiles/axf.dir/ref-tbl-sub-select.c.o" "CMakeFiles/axf.dir/ref-restore-read.c.o" "CMakeFiles/axf.dir/align-restore-read.c.o" "CMakeFiles/axf.dir/raw-restore-read.c.o" "CMakeFiles/axf.dir/raw-restore-qual.c.o" "CMakeFiles/axf.dir/seq-restore-read.c.o" "CMakeFiles/axf.dir/seq-restore-linkage-group.c.o" "CMakeFiles/axf.dir/seq-construct-read.c.o" CMakeFiles/axf.dir/cigar.c.o CMakeFiles/axf.dir/project_read_from_sequence.c.o "CMakeFiles/axf.dir/not-my-row.c.o" "CMakeFiles/axf.dir/template-len.c.o" "CMakeFiles/axf.dir/get-sam-flags.c.o" "CMakeFiles/axf.dir/align-ref-pos.c.o" "CMakeFiles/axf.dir/align-ref-name.c.o" "CMakeFiles/axf.dir/align-ref-seq-id.c.o" "CMakeFiles/axf.dir/align-local_ref_id.c.o" "CMakeFiles/axf.dir/align-local_ref_start.c.o" "CMakeFiles/axf.dir/generate-mismatch-qual.c.o" "CMakeFiles/axf.dir/mismatch-restore-qual.c.o" "CMakeFiles/axf.dir/ref-preserve_qual.c.o" "CMakeFiles/axf.dir/ref-tbl.c.o" "CMakeFiles/axf.dir/make-cmp-read_desc.c.o" CMakeFiles/axf.dir/get_mate_align_ids.c.o "CMakeFiles/axf.dir/range-list.c.o" CMakeFiles/axf.dir/refseq.c.o CMakeFiles/axf.dir/wgs.c.o "CMakeFiles/axf.dir/restore-read.c.o" /usr/bin/ranlib ../../ilib/libaxf.a [ 7%] Built target axf /usr/bin/make -f libs/axf/CMakeFiles/waxf.dir/build.make libs/axf/CMakeFiles/waxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf/CMakeFiles/waxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/axf/CMakeFiles/waxf.dir/build.make libs/axf/CMakeFiles/waxf.dir/build [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o -MF CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o.d -o CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl-sub-select.c [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-restore-read.c.o -MF CMakeFiles/waxf.dir/ref-restore-read.c.o.d -o CMakeFiles/waxf.dir/ref-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-restore-read.c [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/align-restore-read.c.o -MF CMakeFiles/waxf.dir/align-restore-read.c.o.d -o CMakeFiles/waxf.dir/align-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-restore-read.c [ 7%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/raw-restore-read.c.o -MF CMakeFiles/waxf.dir/raw-restore-read.c.o.d -o CMakeFiles/waxf.dir/raw-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-read.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/raw-restore-qual.c.o -MF CMakeFiles/waxf.dir/raw-restore-qual.c.o.d -o CMakeFiles/waxf.dir/raw-restore-qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/raw-restore-qual.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-restore-read.c.o -MF CMakeFiles/waxf.dir/seq-restore-read.c.o.d -o CMakeFiles/waxf.dir/seq-restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-read.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o -MF CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o.d -o CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-restore-linkage-group.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/seq-construct-read.c.o -MF CMakeFiles/waxf.dir/seq-construct-read.c.o.d -o CMakeFiles/waxf.dir/seq-construct-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/seq-construct-read.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/cigar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/cigar.c.o -MF CMakeFiles/waxf.dir/cigar.c.o.d -o CMakeFiles/waxf.dir/cigar.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/cigar.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/project_read_from_sequence.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/not-my-row.c.o -MF CMakeFiles/waxf.dir/not-my-row.c.o.d -o CMakeFiles/waxf.dir/not-my-row.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/not-my-row.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/template-len.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/template-len.c.o -MF CMakeFiles/waxf.dir/template-len.c.o.d -o CMakeFiles/waxf.dir/template-len.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/template-len.c [ 8%] Building C object libs/axf/CMakeFiles/waxf.dir/get-sam-flags.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-pos.c.o -MF CMakeFiles/waxf.dir/align-ref-pos.c.o.d -o CMakeFiles/waxf.dir/align-ref-pos.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-pos.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-name.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-name.c.o -MF CMakeFiles/waxf.dir/align-ref-name.c.o.d -o CMakeFiles/waxf.dir/align-ref-name.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-name.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-ref-seq-id.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/align-ref-seq-id.c.o -MF CMakeFiles/waxf.dir/align-ref-seq-id.c.o.d -o CMakeFiles/waxf.dir/align-ref-seq-id.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-ref-seq-id.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/align-local_ref_id.c.o -MF CMakeFiles/waxf.dir/align-local_ref_id.c.o.d -o CMakeFiles/waxf.dir/align-local_ref_id.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_id.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/align-local_ref_start.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/align-local_ref_start.c.o -MF CMakeFiles/waxf.dir/align-local_ref_start.c.o.d -o CMakeFiles/waxf.dir/align-local_ref_start.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/align-local_ref_start.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/generate-mismatch-qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/generate-mismatch-qual.c.o -MF CMakeFiles/waxf.dir/generate-mismatch-qual.c.o.d -o CMakeFiles/waxf.dir/generate-mismatch-qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/generate-mismatch-qual.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/mismatch-restore-qual.c.o -MF CMakeFiles/waxf.dir/mismatch-restore-qual.c.o.d -o CMakeFiles/waxf.dir/mismatch-restore-qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/mismatch-restore-qual.c [ 9%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-preserve_qual.c.o -MF CMakeFiles/waxf.dir/ref-preserve_qual.c.o.d -o CMakeFiles/waxf.dir/ref-preserve_qual.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-preserve_qual.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/ref-tbl.c.o -MF CMakeFiles/waxf.dir/ref-tbl.c.o.d -o CMakeFiles/waxf.dir/ref-tbl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/ref-tbl.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/make-cmp-read_desc.c.o -MF CMakeFiles/waxf.dir/make-cmp-read_desc.c.o.d -o CMakeFiles/waxf.dir/make-cmp-read_desc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/make-cmp-read_desc.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/get_mate_align_ids.c.o -MF CMakeFiles/waxf.dir/get_mate_align_ids.c.o.d -o CMakeFiles/waxf.dir/get_mate_align_ids.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/get_mate_align_ids.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/range-list.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/range-list.c.o -MF CMakeFiles/waxf.dir/range-list.c.o.d -o CMakeFiles/waxf.dir/range-list.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/range-list.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/refseq.c.o -MF CMakeFiles/waxf.dir/refseq.c.o.d -o CMakeFiles/waxf.dir/refseq.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/wgs.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/wgs.c.o -MF CMakeFiles/waxf.dir/wgs.c.o.d -o CMakeFiles/waxf.dir/wgs.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/wgs.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/restore-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/restore-read.c.o -MF CMakeFiles/waxf.dir/restore-read.c.o.d -o CMakeFiles/waxf.dir/restore-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/restore-read.c [ 10%] Building C object libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/axf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/axf/CMakeFiles/waxf.dir/refseq-stats.c.o -MF CMakeFiles/waxf.dir/refseq-stats.c.o.d -o CMakeFiles/waxf.dir/refseq-stats.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/axf/refseq-stats.c [ 10%] Linking C static library ../../ilib/libwaxf.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -P CMakeFiles/waxf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/axf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/waxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwaxf.a "CMakeFiles/waxf.dir/ref-tbl-sub-select.c.o" "CMakeFiles/waxf.dir/ref-restore-read.c.o" "CMakeFiles/waxf.dir/align-restore-read.c.o" "CMakeFiles/waxf.dir/raw-restore-read.c.o" "CMakeFiles/waxf.dir/raw-restore-qual.c.o" "CMakeFiles/waxf.dir/seq-restore-read.c.o" "CMakeFiles/waxf.dir/seq-restore-linkage-group.c.o" "CMakeFiles/waxf.dir/seq-construct-read.c.o" CMakeFiles/waxf.dir/cigar.c.o CMakeFiles/waxf.dir/project_read_from_sequence.c.o "CMakeFiles/waxf.dir/not-my-row.c.o" "CMakeFiles/waxf.dir/template-len.c.o" "CMakeFiles/waxf.dir/get-sam-flags.c.o" 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast/CMakeFiles/vdb-blast.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/blast/CMakeFiles/vdb-blast.dir/build.make libs/blast/CMakeFiles/vdb-blast.dir/build [ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/blast-mgr.c.o -MF CMakeFiles/vdb-blast.dir/blast-mgr.c.o.d -o CMakeFiles/vdb-blast.dir/blast-mgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/blast-mgr.c [ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/reader.c.o -MF CMakeFiles/vdb-blast.dir/reader.c.o.d -o CMakeFiles/vdb-blast.dir/reader.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reader.c [ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/blast/CMakeFiles/vdb-blast.dir/reference.c.o -MF CMakeFiles/vdb-blast.dir/reference.c.o.d -o CMakeFiles/vdb-blast.dir/reference.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/blast/reference.c [ 10%] Building C object libs/blast/CMakeFiles/vdb-blast.dir/run-set.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/blast && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/blast\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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cmake_link_script CMakeFiles/vdb-blast.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvdb-blast.a "CMakeFiles/vdb-blast.dir/blast-mgr.c.o" "CMakeFiles/vdb-blast.dir/reader.c.o" "CMakeFiles/vdb-blast.dir/reference.c.o" "CMakeFiles/vdb-blast.dir/run-set.c.o" /usr/bin/ranlib ../../ilib/libvdb-blast.a [ 10%] Built target vdb-blast /usr/bin/make -f libs/cloud/CMakeFiles/cloud.dir/build.make libs/cloud/CMakeFiles/cloud.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud/CMakeFiles/cloud.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/cloud/CMakeFiles/cloud.dir/build.make libs/cloud/CMakeFiles/cloud.dir/build [ 10%] Building C object libs/cloud/CMakeFiles/cloud.dir/aws-auth.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/cloud/CMakeFiles/cloud.dir/aws.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/cloud/CMakeFiles/cloud.dir/cloud-cmn.c.o -MF CMakeFiles/cloud.dir/cloud-cmn.c.o.d -o CMakeFiles/cloud.dir/cloud-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/cloud-cmn.c [ 10%] Building C object libs/cloud/CMakeFiles/cloud.dir/cloud-mgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/cloud/CMakeFiles/cloud.dir/cloud.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/cloud/CMakeFiles/cloud.dir/gcp-authentication.c.o -MF CMakeFiles/cloud.dir/gcp-authentication.c.o.d -o CMakeFiles/cloud.dir/gcp-authentication.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/cloud/gcp-authentication.c [ 11%] Building C object libs/cloud/CMakeFiles/cloud.dir/gcp.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/cloud\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /usr/pkg/bin/cmake -P CMakeFiles/cloud.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/cloud && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/cloud.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libcloud.a "CMakeFiles/cloud.dir/aws-auth.c.o" CMakeFiles/cloud.dir/aws.c.o "CMakeFiles/cloud.dir/cloud-cmn.c.o" "CMakeFiles/cloud.dir/cloud-mgr.c.o" CMakeFiles/cloud.dir/cloud.c.o "CMakeFiles/cloud.dir/gcp-authentication.c.o" CMakeFiles/cloud.dir/gcp.c.o /usr/bin/ranlib ../../ilib/libcloud.a [ 11%] Built target cloud /usr/bin/make -f libs/ext/bzip2/CMakeFiles/bz2.dir/build.make libs/ext/bzip2/CMakeFiles/bz2.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" 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libs/ext/bzip2/CMakeFiles/bz2.dir/bzlib.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/bzip2 && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/bzip2\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/bignum.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/constant_time.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/ecp_curves.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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libs/ext/mbedtls/CMakeFiles/mbedcrypto.dir/oid.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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../../../ilib/libmbedcrypto.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -P CMakeFiles/mbedcrypto.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/mbedcrypto.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libmbedcrypto.a CMakeFiles/mbedcrypto.dir/aes.c.o CMakeFiles/mbedcrypto.dir/aesni.c.o CMakeFiles/mbedcrypto.dir/aria.c.o CMakeFiles/mbedcrypto.dir/asn1parse.c.o CMakeFiles/mbedcrypto.dir/asn1write.c.o CMakeFiles/mbedcrypto.dir/base64.c.o CMakeFiles/mbedcrypto.dir/bignum.c.o CMakeFiles/mbedcrypto.dir/camellia.c.o CMakeFiles/mbedcrypto.dir/ccm.c.o CMakeFiles/mbedcrypto.dir/chacha20.c.o CMakeFiles/mbedcrypto.dir/chachapoly.c.o CMakeFiles/mbedcrypto.dir/cipher.c.o CMakeFiles/mbedcrypto.dir/cipher_wrap.c.o CMakeFiles/mbedcrypto.dir/cmac.c.o 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CMakeFiles/mbedcrypto.dir/platform_util.c.o CMakeFiles/mbedcrypto.dir/poly1305.c.o CMakeFiles/mbedcrypto.dir/psa_crypto.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_client.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_driver_wrappers.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_slot_management.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_storage.c.o CMakeFiles/mbedcrypto.dir/psa_its_file.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_rsa.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_mac.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_ecp.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_hash.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_cipher.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_aead.c.o CMakeFiles/mbedcrypto.dir/psa_crypto_se.c.o CMakeFiles/mbedcrypto.dir/ripemd160.c.o CMakeFiles/mbedcrypto.dir/rsa.c.o CMakeFiles/mbedcrypto.dir/rsa_alt_helpers.c.o CMakeFiles/mbedcrypto.dir/sha1.c.o CMakeFiles/mbedcrypto.dir/sha256.c.o CMakeFiles/mbedcrypto.dir/sha512.c.o /usr/bin/ranlib ../../../ilib/libmbedcrypto.a [ 20%] Built target mbedcrypto /usr/bin/make -f libs/ext/mbedtls/CMakeFiles/mbedx509.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedx509.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls/CMakeFiles/mbedx509.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/ext/mbedtls/CMakeFiles/mbedx509.dir/build.make libs/ext/mbedtls/CMakeFiles/mbedx509.dir/build [ 20%] Building C object 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-DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/mbedtls/CMakeFiles/mbedx509.dir/x509.c.o -MF CMakeFiles/mbedx509.dir/x509.c.o.d -o CMakeFiles/mbedx509.dir/x509.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/mbedtls/x509.c [ 20%] Linking C static library ../../../ilib/libmbedx509.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -P CMakeFiles/mbedx509.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/mbedx509.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libmbedx509.a CMakeFiles/mbedx509.dir/x509_crt.c.o CMakeFiles/mbedx509.dir/x509.c.o /usr/bin/ranlib 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20%] Building C object libs/ext/mbedtls/CMakeFiles/mbedtls.dir/debug.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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libs/ext/mbedtls/CMakeFiles/mbedtls.dir/ssl_tls.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/mbedtls\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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/usr/pkg/bin/cmake -P CMakeFiles/mbedtls.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/mbedtls && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/mbedtls.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libmbedtls.a CMakeFiles/mbedtls.dir/debug.c.o CMakeFiles/mbedtls.dir/ssl_ciphersuites.c.o CMakeFiles/mbedtls.dir/ssl_client.c.o CMakeFiles/mbedtls.dir/ssl_msg.c.o CMakeFiles/mbedtls.dir/ssl_tls.c.o CMakeFiles/mbedtls.dir/ssl_tls12_client.c.o CMakeFiles/mbedtls.dir/ssl_tls12_server.c.o CMakeFiles/mbedtls.dir/ssl_tls13_keys.c.o CMakeFiles/mbedtls.dir/ssl_debug_helpers_generated.c.o /usr/bin/ranlib ../../../ilib/libmbedtls.a [ 21%] Built target mbedtls /usr/bin/make -f libs/ext/zlib/CMakeFiles/z.dir/build.make libs/ext/zlib/CMakeFiles/z.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix 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-D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/compress.c [ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/crc32.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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&& /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/deflate.c.o -MF CMakeFiles/z.dir/deflate.c.o.d -o CMakeFiles/z.dir/deflate.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/deflate.c [ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzclose.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzclose.c.o -MF CMakeFiles/z.dir/gzclose.c.o.d -o CMakeFiles/z.dir/gzclose.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzclose.c [ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzlib.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzlib.c.o -MF CMakeFiles/z.dir/gzlib.c.o.d -o CMakeFiles/z.dir/gzlib.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzlib.c [ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzread.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzread.c.o -MF CMakeFiles/z.dir/gzread.c.o.d -o CMakeFiles/z.dir/gzread.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzread.c [ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/gzwrite.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/gzwrite.c.o -MF CMakeFiles/z.dir/gzwrite.c.o.d -o CMakeFiles/z.dir/gzwrite.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/gzwrite.c [ 22%] Building C object libs/ext/zlib/CMakeFiles/z.dir/infback.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/infback.c.o -MF CMakeFiles/z.dir/infback.c.o.d -o CMakeFiles/z.dir/infback.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/infback.c [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inffast.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/inffast.c.o -MF CMakeFiles/z.dir/inffast.c.o.d -o CMakeFiles/z.dir/inffast.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inffast.c [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inflate.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/inflate.c.o -MF CMakeFiles/z.dir/inflate.c.o.d -o CMakeFiles/z.dir/inflate.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/inflate.c [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/inftrees.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/ext/zlib/CMakeFiles/z.dir/trees.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zlib/CMakeFiles/z.dir/uncompr.c.o -MF CMakeFiles/z.dir/uncompr.c.o.d -o CMakeFiles/z.dir/uncompr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/uncompr.c [ 23%] Building C object libs/ext/zlib/CMakeFiles/z.dir/zutil.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -DZ_HAVE_UNISTD_H=1 -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zlib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zlib/zutil.c [ 23%] Linking C static library ../../../ilib/libz.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /usr/pkg/bin/cmake -P CMakeFiles/z.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zlib && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/z.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libz.a CMakeFiles/z.dir/adler32.c.o CMakeFiles/z.dir/compress.c.o CMakeFiles/z.dir/crc32.c.o CMakeFiles/z.dir/deflate.c.o CMakeFiles/z.dir/gzclose.c.o CMakeFiles/z.dir/gzlib.c.o CMakeFiles/z.dir/gzread.c.o CMakeFiles/z.dir/gzwrite.c.o CMakeFiles/z.dir/infback.c.o CMakeFiles/z.dir/inffast.c.o CMakeFiles/z.dir/inflate.c.o CMakeFiles/z.dir/inftrees.c.o CMakeFiles/z.dir/trees.c.o CMakeFiles/z.dir/uncompr.c.o CMakeFiles/z.dir/zutil.c.o /usr/bin/ranlib ../../../ilib/libz.a [ 23%] Built target z /usr/bin/make -f libs/ext/zstd/CMakeFiles/zstd.dir/build.make libs/ext/zstd/CMakeFiles/zstd.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zstd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd/CMakeFiles/zstd.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/ext/zstd/CMakeFiles/zstd.dir/build.make libs/ext/zstd/CMakeFiles/zstd.dir/build [ 23%] Building C object libs/ext/zstd/CMakeFiles/zstd.dir/zstd.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/ext/zstd\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/ext/zstd/CMakeFiles/zstd.dir/zstd.c.o -MF CMakeFiles/zstd.dir/zstd.c.o.d -o CMakeFiles/zstd.dir/zstd.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ext/zstd/zstd.c [ 24%] Linking C static library ../../../ilib/libzstd.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd && /usr/pkg/bin/cmake -P CMakeFiles/zstd.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ext/zstd && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/zstd.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libzstd.a CMakeFiles/zstd.dir/zstd.c.o /usr/bin/ranlib ../../../ilib/libzstd.a [ 24%] Built target zstd /usr/bin/make -f libs/kapp/CMakeFiles/kapp.dir/build.make libs/kapp/CMakeFiles/kapp.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp/CMakeFiles/kapp.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kapp/CMakeFiles/kapp.dir/build.make libs/kapp/CMakeFiles/kapp.dir/build [ 24%] Building C object libs/kapp/CMakeFiles/kapp.dir/main.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp.dir/main.c.o -MF CMakeFiles/kapp.dir/main.c.o.d -o CMakeFiles/kapp.dir/main.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/main.c [ 24%] Building C object libs/kapp/CMakeFiles/kapp.dir/args.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args-conv.c [ 24%] Building C object libs/kapp/CMakeFiles/kapp.dir/tokenizer.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp.dir/unix/args-conv-os.c.o -MF CMakeFiles/kapp.dir/unix/args-conv-os.c.o.d -o CMakeFiles/kapp.dir/unix/args-conv-os.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/args-conv-os.c [ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp.dir/unix/sysmain.c.o -MF CMakeFiles/kapp.dir/unix/sysmain.c.o.d -o CMakeFiles/kapp.dir/unix/sysmain.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/sysmain.c [ 25%] Building C object libs/kapp/CMakeFiles/kapp.dir/mac/ram.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp.dir/mac/ram.c.o -MF CMakeFiles/kapp.dir/mac/ram.c.o.d -o CMakeFiles/kapp.dir/mac/ram.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/mac/ram.c [ 25%] Linking C static library ../../lib/libkapp.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -P CMakeFiles/kapp.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kapp.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libkapp.a CMakeFiles/kapp.dir/main.c.o CMakeFiles/kapp.dir/args.c.o "CMakeFiles/kapp.dir/args-conv.c.o" CMakeFiles/kapp.dir/tokenizer.c.o "CMakeFiles/kapp.dir/log-xml.c.o" "CMakeFiles/kapp.dir/unix/args-conv-os.c.o" CMakeFiles/kapp.dir/unix/sysmain.c.o CMakeFiles/kapp.dir/mac/ram.c.o /usr/bin/ranlib ../../lib/libkapp.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libkapp.a.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libkapp.a libkapp.a.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libkapp.a.3.0.6 libkapp.a.3 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libkapp.a.3 libkapp.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libkapp.a libkapp-static.a [ 25%] Built target kapp /usr/bin/make -f libs/kapp/CMakeFiles/kapp-norsrc.dir/build.make libs/kapp/CMakeFiles/kapp-norsrc.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp/CMakeFiles/kapp-norsrc.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kapp/CMakeFiles/kapp-norsrc.dir/build.make libs/kapp/CMakeFiles/kapp-norsrc.dir/build [ 25%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/main.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/args.c.o -MF CMakeFiles/kapp-norsrc.dir/args.c.o.d -o CMakeFiles/kapp-norsrc.dir/args.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args.c [ 25%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/args-conv.c.o -MF CMakeFiles/kapp-norsrc.dir/args-conv.c.o.d -o CMakeFiles/kapp-norsrc.dir/args-conv.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/args-conv.c [ 25%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/tokenizer.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/tokenizer.c [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/log-xml.c.o -MF CMakeFiles/kapp-norsrc.dir/log-xml.c.o.d -o CMakeFiles/kapp-norsrc.dir/log-xml.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/log-xml.c [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o -MF CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o.d -o CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/args-conv-os.c [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o -MF CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o.d -o CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/unix/sysmain.c [ 26%] Building C object libs/kapp/CMakeFiles/kapp-norsrc.dir/mac/ram.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DNO_KRSRC=1 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kapp\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kapp/CMakeFiles/kapp-norsrc.dir/mac/ram.c.o -MF CMakeFiles/kapp-norsrc.dir/mac/ram.c.o.d -o CMakeFiles/kapp-norsrc.dir/mac/ram.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kapp/mac/ram.c [ 26%] Linking C static library ../../ilib/libkapp-norsrc.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -P CMakeFiles/kapp-norsrc.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kapp && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kapp-norsrc.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkapp-norsrc.a "CMakeFiles/kapp-norsrc.dir/main.c.o" "CMakeFiles/kapp-norsrc.dir/args.c.o" "CMakeFiles/kapp-norsrc.dir/args-conv.c.o" "CMakeFiles/kapp-norsrc.dir/tokenizer.c.o" "CMakeFiles/kapp-norsrc.dir/log-xml.c.o" "CMakeFiles/kapp-norsrc.dir/unix/args-conv-os.c.o" "CMakeFiles/kapp-norsrc.dir/unix/sysmain.c.o" 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object libs/kdb/CMakeFiles/kdb.dir/btree.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/kdb/CMakeFiles/kdb.dir/dbmgr-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/kdb/CMakeFiles/kdb.dir/table.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/kdb/CMakeFiles/kdb.dir/ptrieval-v1.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/kdb/CMakeFiles/kdb.dir/ptrieval-v2.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb/CMakeFiles/wkdb.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kdb/CMakeFiles/wkdb.dir/build.make libs/kdb/CMakeFiles/wkdb.dir/build [ 29%] Building C object libs/kdb/CMakeFiles/wkdb.dir/btree.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g 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libs/kdb/CMakeFiles/wkdb.dir/wu64idx-v3.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfc/CMakeFiles/kfc.dir/xc.c.o -MF CMakeFiles/kfc.dir/xc.c.o.d -o CMakeFiles/kfc.dir/xc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/xc.c [ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfc/CMakeFiles/kfc.dir/unix/sysctx.c.o -MF CMakeFiles/kfc.dir/unix/sysctx.c.o.d -o CMakeFiles/kfc.dir/unix/sysctx.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/unix/sysctx.c [ 32%] Building C object libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfc/CMakeFiles/kfc.dir/unix/sysrsrc.c.o -MF CMakeFiles/kfc.dir/unix/sysrsrc.c.o.d -o CMakeFiles/kfc.dir/unix/sysrsrc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfc/unix/sysrsrc.c [ 33%] Linking C static library ../../ilib/libkfc.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /usr/pkg/bin/cmake -P CMakeFiles/kfc.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfc && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfc.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkfc.a CMakeFiles/kfc.dir/except.c.o CMakeFiles/kfc.dir/refcount.c.o CMakeFiles/kfc.dir/rsrc.c.o CMakeFiles/kfc.dir/tstate.c.o CMakeFiles/kfc.dir/vtbl.c.o CMakeFiles/kfc.dir/xc.c.o CMakeFiles/kfc.dir/unix/sysctx.c.o CMakeFiles/kfc.dir/unix/sysrsrc.c.o /usr/bin/ranlib ../../ilib/libkfc.a [ 33%] Built target kfc /usr/bin/make -f libs/kfg/CMakeFiles/kfg.dir/build.make libs/kfg/CMakeFiles/kfg.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg/CMakeFiles/kfg.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kfg/CMakeFiles/kfg.dir/build.make libs/kfg/CMakeFiles/kfg.dir/build [ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-grammar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/zz_config-grammar.c.o -MF CMakeFiles/kfg.dir/zz_config-grammar.c.o.d -o CMakeFiles/kfg.dir/zz_config-grammar.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/zz_config-grammar.c [ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/zz_config-lex.c.o -MF CMakeFiles/kfg.dir/zz_config-lex.c.o.d -o CMakeFiles/kfg.dir/zz_config-lex.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/zz_config-lex.c [ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/config-aws.c.o -MF CMakeFiles/kfg.dir/config-aws.c.o.d -o CMakeFiles/kfg.dir/config-aws.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/config-aws.c [ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/config.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/config.c.o -MF CMakeFiles/kfg.dir/config.c.o.d -o CMakeFiles/kfg.dir/config.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/config.c [ 33%] Building C object libs/kfg/CMakeFiles/kfg.dir/docker.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/keystore.c.o -MF CMakeFiles/kfg.dir/keystore.c.o.d -o CMakeFiles/kfg.dir/keystore.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/keystore.c [ 34%] Building C object libs/kfg/CMakeFiles/kfg.dir/ngc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/properties.c.o -MF CMakeFiles/kfg.dir/properties.c.o.d -o CMakeFiles/kfg.dir/properties.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/properties.c [ 34%] Building C object libs/kfg/CMakeFiles/kfg.dir/report-kfg.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfg\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfg/CMakeFiles/kfg.dir/repository.c.o -MF CMakeFiles/kfg.dir/repository.c.o.d -o CMakeFiles/kfg.dir/repository.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfg/repository.c [ 34%] Linking C static library ../../ilib/libkfg.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /usr/pkg/bin/cmake -P CMakeFiles/kfg.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfg && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfg.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkfg.a "CMakeFiles/kfg.dir/zz_config-grammar.c.o" "CMakeFiles/kfg.dir/zz_config-lex.c.o" "CMakeFiles/kfg.dir/config-aws.c.o" CMakeFiles/kfg.dir/config.c.o CMakeFiles/kfg.dir/docker.c.o CMakeFiles/kfg.dir/kart.c.o CMakeFiles/kfg.dir/keystore.c.o CMakeFiles/kfg.dir/ngc.c.o CMakeFiles/kfg.dir/properties.c.o "CMakeFiles/kfg.dir/report-kfg.c.o" CMakeFiles/kfg.dir/repository.c.o /usr/bin/ranlib ../../ilib/libkfg.a [ 34%] Built target kfg /usr/bin/make -f libs/kfs/CMakeFiles/kfs-nommap.dir/build.make libs/kfs/CMakeFiles/kfs-nommap.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs/CMakeFiles/kfs-nommap.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kfs/CMakeFiles/kfs-nommap.dir/build.make libs/kfs/CMakeFiles/kfs-nommap.dir/build [ 34%] Building C object libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Darrayfile -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs-nommap.dir/directory.c.o -MF CMakeFiles/kfs-nommap.dir/directory.c.o.d -o CMakeFiles/kfs-nommap.dir/directory.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/directory.c [ 34%] Linking C static library ../../ilib/libkfs-nommap.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /usr/pkg/bin/cmake -P CMakeFiles/kfs-nommap.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kfs-nommap.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkfs-nommap.a "CMakeFiles/kfs-nommap.dir/directory.c.o" /usr/bin/ranlib ../../ilib/libkfs-nommap.a [ 34%] Built target kfs-nommap /usr/bin/make -f libs/kfs/CMakeFiles/kfs.dir/build.make libs/kfs/CMakeFiles/kfs.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs/CMakeFiles/kfs.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kfs/CMakeFiles/kfs.dir/build.make libs/kfs/CMakeFiles/kfs.dir/build [ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/directory.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/directory.c.o -MF CMakeFiles/kfs.dir/directory.c.o.d -o CMakeFiles/kfs.dir/directory.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/directory.c [ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/arrayfile.c.o -MF CMakeFiles/kfs.dir/arrayfile.c.o.d -o CMakeFiles/kfs.dir/arrayfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/arrayfile.c [ 34%] Building C object libs/kfs/CMakeFiles/kfs.dir/file.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/file.c.o -MF CMakeFiles/kfs.dir/file.c.o.d -o CMakeFiles/kfs.dir/file.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/file.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/chunk-reader.c.o -MF CMakeFiles/kfs.dir/chunk-reader.c.o.d -o CMakeFiles/kfs.dir/chunk-reader.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/chunk-reader.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/gzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/gzip.c.o -MF CMakeFiles/kfs.dir/gzip.c.o.d -o CMakeFiles/kfs.dir/gzip.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/gzip.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/bzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/bzip.c.o -MF CMakeFiles/kfs.dir/bzip.c.o.d -o CMakeFiles/kfs.dir/bzip.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/bzip.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/md5.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/md5.c.o -MF CMakeFiles/kfs.dir/md5.c.o.d -o CMakeFiles/kfs.dir/md5.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/md5.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/crc32.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/crc32.c.o -MF CMakeFiles/kfs.dir/crc32.c.o.d -o CMakeFiles/kfs.dir/crc32.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/crc32.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/arc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/arc.c.o -MF CMakeFiles/kfs.dir/arc.c.o.d -o CMakeFiles/kfs.dir/arc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/arc.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/toc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/toc.c.o -MF CMakeFiles/kfs.dir/toc.c.o.d -o CMakeFiles/kfs.dir/toc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/toc.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocentry.c.o -MF CMakeFiles/kfs.dir/tocentry.c.o.d -o CMakeFiles/kfs.dir/tocentry.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocentry.c [ 35%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocdir.c.o -MF CMakeFiles/kfs.dir/tocdir.c.o.d -o CMakeFiles/kfs.dir/tocdir.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocdir.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/tocfile.c.o -MF CMakeFiles/kfs.dir/tocfile.c.o.d -o CMakeFiles/kfs.dir/tocfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tocfile.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/sra.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/sra.c.o -MF CMakeFiles/kfs.dir/sra.c.o.d -o CMakeFiles/kfs.dir/sra.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/sra.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/tar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/tar.c.o -MF CMakeFiles/kfs.dir/tar.c.o.d -o CMakeFiles/kfs.dir/tar.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/tar.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/teefile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/teefile.c.o -MF CMakeFiles/kfs.dir/teefile.c.o.d -o CMakeFiles/kfs.dir/teefile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/teefile.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile.c.o -MF CMakeFiles/kfs.dir/buffile.c.o.d -o CMakeFiles/kfs.dir/buffile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile-read.c.o -MF CMakeFiles/kfs.dir/buffile-read.c.o.d -o CMakeFiles/kfs.dir/buffile-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile-read.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/buffile-write.c.o -MF CMakeFiles/kfs.dir/buffile-write.c.o.d -o CMakeFiles/kfs.dir/buffile-write.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/buffile-write.c [ 36%] Building C object libs/kfs/CMakeFiles/kfs.dir/subfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/subfile.c.o -MF CMakeFiles/kfs.dir/subfile.c.o.d -o CMakeFiles/kfs.dir/subfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/subfile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/nullfile.c.o -MF CMakeFiles/kfs.dir/nullfile.c.o.d -o CMakeFiles/kfs.dir/nullfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/nullfile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/countfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/countfile.c.o -MF CMakeFiles/kfs.dir/countfile.c.o.d -o CMakeFiles/kfs.dir/countfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/countfile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/dir_test.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/dir_test.c.o -MF CMakeFiles/kfs.dir/dir_test.c.o.d -o CMakeFiles/kfs.dir/dir_test.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/dir_test.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/pagefile.c.o -MF CMakeFiles/kfs.dir/pagefile.c.o.d -o CMakeFiles/kfs.dir/pagefile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/pagefile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/pmem.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/pmem.c.o -MF CMakeFiles/kfs.dir/pmem.c.o.d -o CMakeFiles/kfs.dir/pmem.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/pmem.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/readheadfile.c.o -MF CMakeFiles/kfs.dir/readheadfile.c.o.d -o CMakeFiles/kfs.dir/readheadfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/readheadfile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/ramfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/ramfile.c.o -MF CMakeFiles/kfs.dir/ramfile.c.o.d -o CMakeFiles/kfs.dir/ramfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/ramfile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/extendable-ramfile.c.o -MF CMakeFiles/kfs.dir/extendable-ramfile.c.o.d -o CMakeFiles/kfs.dir/extendable-ramfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/extendable-ramfile.c [ 37%] Building C object libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/quickmount.c.o -MF CMakeFiles/kfs.dir/quickmount.c.o.d -o CMakeFiles/kfs.dir/quickmount.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/quickmount.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/report.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/lockfile.c.o -MF CMakeFiles/kfs.dir/lockfile.c.o.d -o CMakeFiles/kfs.dir/lockfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lockfile.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/remove-file-task.c.o -MF CMakeFiles/kfs.dir/remove-file-task.c.o.d -o CMakeFiles/kfs.dir/remove-file-task.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/remove-file-task.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile.c.o -MF CMakeFiles/kfs.dir/cacheteefile.c.o.d -o CMakeFiles/kfs.dir/cacheteefile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile2.c.o -MF CMakeFiles/kfs.dir/cacheteefile2.c.o.d -o CMakeFiles/kfs.dir/cacheteefile2.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile2.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/cacheteefile3.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/cacheteefile3.c.o -MF CMakeFiles/kfs.dir/cacheteefile3.c.o.d -o CMakeFiles/kfs.dir/cacheteefile3.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/cacheteefile3.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/rrcachedfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/rrcachedfile.c.o -MF CMakeFiles/kfs.dir/rrcachedfile.c.o.d -o CMakeFiles/kfs.dir/rrcachedfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/rrcachedfile.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/recorder.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/recorder.c.o -MF CMakeFiles/kfs.dir/recorder.c.o.d -o CMakeFiles/kfs.dir/recorder.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/recorder.c [ 38%] Building C object libs/kfs/CMakeFiles/kfs.dir/logfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/logfile.c.o -MF CMakeFiles/kfs.dir/logfile.c.o.d -o CMakeFiles/kfs.dir/logfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/logfile.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/callback_file.c.o -MF CMakeFiles/kfs.dir/callback_file.c.o.d -o CMakeFiles/kfs.dir/callback_file.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/callback_file.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/poolpages.c.o -MF CMakeFiles/kfs.dir/poolpages.c.o.d -o CMakeFiles/kfs.dir/poolpages.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/poolpages.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/lru_cache.c.o -MF CMakeFiles/kfs.dir/lru_cache.c.o.d -o CMakeFiles/kfs.dir/lru_cache.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/lru_cache.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/from_to_namelist.c.o -MF CMakeFiles/kfs.dir/from_to_namelist.c.o.d -o CMakeFiles/kfs.dir/from_to_namelist.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/from_to_namelist.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/limitfile.c.o -MF CMakeFiles/kfs.dir/limitfile.c.o.d -o CMakeFiles/kfs.dir/limitfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/limitfile.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/appendfile.c.o -MF CMakeFiles/kfs.dir/appendfile.c.o.d -o CMakeFiles/kfs.dir/appendfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/appendfile.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/mmap.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/mmap.c.o -MF CMakeFiles/kfs.dir/mmap.c.o.d -o CMakeFiles/kfs.dir/mmap.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/mmap.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysdir.c.o -MF CMakeFiles/kfs.dir/unix/sysdir.c.o.d -o CMakeFiles/kfs.dir/unix/sysdir.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdir.c [ 39%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysdll.c.o -MF CMakeFiles/kfs.dir/unix/sysdll.c.o.d -o CMakeFiles/kfs.dir/unix/sysdll.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysdll.c [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysfile.c.o -MF CMakeFiles/kfs.dir/unix/sysfile.c.o.d -o CMakeFiles/kfs.dir/unix/sysfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysfile.c [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/syslockfile.c.o -MF CMakeFiles/kfs.dir/unix/syslockfile.c.o.d -o CMakeFiles/kfs.dir/unix/syslockfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/syslockfile.c [ 40%] Building C object libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kfs/CMakeFiles/kfs.dir/unix/sysmmap.c.o -MF CMakeFiles/kfs.dir/unix/sysmmap.c.o.d -o CMakeFiles/kfs.dir/unix/sysmmap.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kfs/unix/sysmmap.c [ 40%] Linking C static library ../../ilib/libkfs.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kfs && 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../../ilib/libkfs.a [ 40%] Built target kfs /usr/bin/make -f libs/klib/CMakeFiles/klib.dir/build.make libs/klib/CMakeFiles/klib.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/CMakeFiles/klib.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/klib/CMakeFiles/klib.dir/build.make libs/klib/CMakeFiles/klib.dir/build [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/all-vdb-version.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/base64.c.o -MF CMakeFiles/klib.dir/base64.c.o.d -o CMakeFiles/klib.dir/base64.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/base64.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/bsearch.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/bsearch.c.o -MF CMakeFiles/klib.dir/bsearch.c.o.d -o CMakeFiles/klib.dir/bsearch.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/bsearch.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/bstpersist.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/bstpersist.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/btree.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/klib/CMakeFiles/klib.dir/container.c.o -MF CMakeFiles/klib.dir/container.c.o.d -o CMakeFiles/klib.dir/container.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/container.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/cp1252.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/cp1252.c.o -MF CMakeFiles/klib.dir/cp1252.c.o.d -o CMakeFiles/klib.dir/cp1252.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/cp1252.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/crc32.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/crc32.c.o -MF CMakeFiles/klib.dir/crc32.c.o.d -o CMakeFiles/klib.dir/crc32.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/crc32.c [ 41%] Building C object libs/klib/CMakeFiles/klib.dir/data-buffer.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/data-buffer.c.o -MF CMakeFiles/klib.dir/data-buffer.c.o.d -o CMakeFiles/klib.dir/data-buffer.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/data-buffer.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/guid.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/guid.c.o -MF CMakeFiles/klib.dir/guid.c.o.d -o CMakeFiles/klib.dir/guid.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/guid.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/hashfile.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/hashfile.c.o -MF CMakeFiles/klib.dir/hashfile.c.o.d -o CMakeFiles/klib.dir/hashfile.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/hashfile.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/hashtable.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/hashtable.c.o -MF CMakeFiles/klib.dir/hashtable.c.o.d -o CMakeFiles/klib.dir/hashtable.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/hashtable.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/iso8859-1.c.o -MF CMakeFiles/klib.dir/iso8859-1.c.o.d -o CMakeFiles/klib.dir/iso8859-1.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/iso8859-1.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/iso8859.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/iso8859.c.o -MF CMakeFiles/klib.dir/iso8859.c.o.d -o CMakeFiles/klib.dir/iso8859.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/iso8859.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/zz_json-grammar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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-std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/json.c.o -MF CMakeFiles/klib.dir/json.c.o.d -o CMakeFiles/klib.dir/json.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/json.c [ 42%] Building C object libs/klib/CMakeFiles/klib.dir/judy-vector.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy-vector.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/ksort.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/log.c.o -MF CMakeFiles/klib.dir/log.c.o.d -o CMakeFiles/klib.dir/log.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/log.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/md5.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/md5.c.o -MF CMakeFiles/klib.dir/md5.c.o.d -o CMakeFiles/klib.dir/md5.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/md5.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/namelist.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/namelist.c.o -MF CMakeFiles/klib.dir/namelist.c.o.d -o CMakeFiles/klib.dir/namelist.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/namelist.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/num-gen.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/out.c.o -MF CMakeFiles/klib.dir/out.c.o.d -o CMakeFiles/klib.dir/out.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/out.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pack.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/pack.c.o -MF CMakeFiles/klib.dir/pack.c.o.d -o CMakeFiles/klib.dir/pack.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pack.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree-impl.c.o -MF CMakeFiles/klib.dir/pbstree-impl.c.o.d -o CMakeFiles/klib.dir/pbstree-impl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-impl.c [ 43%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree-swapped.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree-swapped.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/pbstree.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/pbstree.c.o -MF CMakeFiles/klib.dir/pbstree.c.o.d -o CMakeFiles/klib.dir/pbstree.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/pbstree.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/printf.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/printf.c.o -MF CMakeFiles/klib.dir/printf.c.o.d -o CMakeFiles/klib.dir/printf.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c: In function 'parse_format_string': /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c:1417:25: warning: variable 'numeric' set but not used [-Wunused-but-set-variable] bool alternate, numeric; ^~~~~~~ /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c: In function 'structured_print_engine': /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c:2541:17: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if ( f . u . f . precision < S . len ) ^~ /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/printf.c:2544:21: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' S . len = (uint32_t) f . u . f . precision; ^ [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/progressbar.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/progressbar.c.o -MF CMakeFiles/klib.dir/progressbar.c.o.d -o CMakeFiles/klib.dir/progressbar.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/progressbar.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/ptpersist.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/ptpersist.c.o -MF CMakeFiles/klib.dir/ptpersist.c.o.d -o CMakeFiles/klib.dir/ptpersist.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/ptpersist.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/ptrie.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/qsort.c.o -MF CMakeFiles/klib.dir/qsort.c.o.d -o CMakeFiles/klib.dir/qsort.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/qsort.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/rc-idx-tbl.c.o -MF CMakeFiles/klib.dir/rc-idx-tbl.c.o.d -o CMakeFiles/klib.dir/rc-idx-tbl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/rc-idx-tbl.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/rc-tbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/rc-tbl.c.o -MF CMakeFiles/klib.dir/rc-tbl.c.o.d -o CMakeFiles/klib.dir/rc-tbl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/rc-tbl.c [ 44%] Building C object libs/klib/CMakeFiles/klib.dir/refcount.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/refcount.c.o -MF CMakeFiles/klib.dir/refcount.c.o.d -o CMakeFiles/klib.dir/refcount.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/refcount.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/report-klib.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/report-klib.c.o -MF CMakeFiles/klib.dir/report-klib.c.o.d -o CMakeFiles/klib.dir/report-klib.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/report-klib.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-32bit.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/SHA-32bit.c.o -MF CMakeFiles/klib.dir/SHA-32bit.c.o.d -o CMakeFiles/klib.dir/SHA-32bit.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/SHA-32bit.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/SHA-64bit.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/SHA-64bit.c.o -MF CMakeFiles/klib.dir/SHA-64bit.c.o.d -o CMakeFiles/klib.dir/SHA-64bit.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/SHA-64bit.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/sra-release-version.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/sra-release-version.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/status-rc-strings.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/status-rc-strings.c.o -MF CMakeFiles/klib.dir/status-rc-strings.c.o.d -o CMakeFiles/klib.dir/status-rc-strings.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status-rc-strings.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/status-rc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/status-rc.c.o -MF CMakeFiles/klib.dir/status-rc.c.o.d -o CMakeFiles/klib.dir/status-rc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status-rc.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/status.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/status.c.o -MF CMakeFiles/klib.dir/status.c.o.d -o CMakeFiles/klib.dir/status.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/status.c [ 45%] Building C object libs/klib/CMakeFiles/klib.dir/symtab.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/symtab.c.o -MF CMakeFiles/klib.dir/symtab.c.o.d -o CMakeFiles/klib.dir/symtab.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/symtab.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/text.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/text.c.o -MF CMakeFiles/klib.dir/text.c.o.d -o CMakeFiles/klib.dir/text.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/text.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/time.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/trie.c.o -MF CMakeFiles/klib.dir/trie.c.o.d -o CMakeFiles/klib.dir/trie.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/trie.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/unpack.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/unpack.c.o -MF CMakeFiles/klib.dir/unpack.c.o.d -o CMakeFiles/klib.dir/unpack.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unpack.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/utf8.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/utf8.c.o -MF CMakeFiles/klib.dir/utf8.c.o.d -o CMakeFiles/klib.dir/utf8.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/utf8.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/vector.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/vector.c.o -MF CMakeFiles/klib.dir/vector.c.o.d -o CMakeFiles/klib.dir/vector.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vector.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/vector_namelist.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/vector_namelist.c.o -MF CMakeFiles/klib.dir/vector_namelist.c.o.d -o CMakeFiles/klib.dir/vector_namelist.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vector_namelist.c [ 46%] Building C object libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/vlen-encode.c.o -MF CMakeFiles/klib.dir/vlen-encode.c.o.d -o CMakeFiles/klib.dir/vlen-encode.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/vlen-encode.c [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/writer.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/writer.c.o -MF CMakeFiles/klib.dir/writer.c.o.d -o CMakeFiles/klib.dir/writer.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/writer.c [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/debug.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/unix/systime.c.o -MF CMakeFiles/klib.dir/unix/systime.c.o.d -o CMakeFiles/klib.dir/unix/systime.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/systime.c [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/unix/syswriter.c.o -MF CMakeFiles/klib.dir/unix/syswriter.c.o.d -o CMakeFiles/klib.dir/unix/syswriter.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/syswriter.c [ 47%] Building C object libs/klib/CMakeFiles/klib.dir/unix/syserrcode.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/klib/CMakeFiles/klib.dir/unix/syserrcode.c.o -MF CMakeFiles/klib.dir/unix/syserrcode.c.o.d -o CMakeFiles/klib.dir/unix/syserrcode.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/unix/syserrcode.c [ 47%] Linking C static library ../../ilib/libklib.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /usr/pkg/bin/cmake -P CMakeFiles/klib.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/klib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libklib.a "CMakeFiles/klib.dir/all-vdb-version.c.o" CMakeFiles/klib.dir/base64.c.o CMakeFiles/klib.dir/bsearch.c.o CMakeFiles/klib.dir/bstpersist.c.o CMakeFiles/klib.dir/btree.c.o CMakeFiles/klib.dir/container.c.o CMakeFiles/klib.dir/cp1252.c.o CMakeFiles/klib.dir/crc32.c.o "CMakeFiles/klib.dir/data-buffer.c.o" CMakeFiles/klib.dir/guid.c.o CMakeFiles/klib.dir/hashfile.c.o CMakeFiles/klib.dir/hashtable.c.o "CMakeFiles/klib.dir/iso8859-1.c.o" CMakeFiles/klib.dir/iso8859.c.o "CMakeFiles/klib.dir/zz_json-grammar.c.o" "CMakeFiles/klib.dir/zz_json-lex.c.o" CMakeFiles/klib.dir/json.c.o 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CMakeFiles/klib.dir/token.c.o CMakeFiles/klib.dir/trie.c.o CMakeFiles/klib.dir/unpack.c.o CMakeFiles/klib.dir/utf8.c.o CMakeFiles/klib.dir/vector.c.o CMakeFiles/klib.dir/vector_namelist.c.o "CMakeFiles/klib.dir/vlen-encode.c.o" CMakeFiles/klib.dir/writer.c.o CMakeFiles/klib.dir/debug.c.o CMakeFiles/klib.dir/unix/misc.c.o CMakeFiles/klib.dir/unix/syslog.c.o CMakeFiles/klib.dir/unix/systime.c.o CMakeFiles/klib.dir/unix/syswriter.c.o CMakeFiles/klib.dir/unix/syserrcode.c.o /usr/bin/ranlib ../../ilib/libklib.a [ 47%] Built target klib /usr/bin/make -f libs/klib/judy/CMakeFiles/judy.dir/build.make libs/klib/judy/CMakeFiles/judy.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy/CMakeFiles/judy.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/klib/judy/CMakeFiles/judy.dir/build.make libs/klib/judy/CMakeFiles/judy.dir/build [ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudyHS.c.o -MF CMakeFiles/judy.dir/JudyHS.c.o.d -o CMakeFiles/judy.dir/JudyHS.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyHS.c [ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudyMalloc.c.o -MF CMakeFiles/judy.dir/JudyMalloc.c.o.d -o CMakeFiles/judy.dir/JudyMalloc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudyMalloc.c [ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/JudySL.c.o -MF CMakeFiles/judy.dir/JudySL.c.o.d -o CMakeFiles/judy.dir/JudySL.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/JudySL.c [ 47%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit.c.o -MF CMakeFiles/judy.dir/Judy_Bit.c.o.d -o CMakeFiles/judy.dir/Judy_Bit.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Cascade.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Count.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Count.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Count.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Count.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Count.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Decascade.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Next.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Next.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Next.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Next.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Next.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o -MF CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_NextEmpty.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Prev.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Bit_Prev.c.o -MF CMakeFiles/judy.dir/Judy_Bit_Prev.c.o.d -o CMakeFiles/judy.dir/Judy_Bit_Prev.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Bit_Prev.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word.c.o -MF CMakeFiles/judy.dir/Judy_Word.c.o.d -o CMakeFiles/judy.dir/Judy_Word.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Cascade.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Cascade.c.o -MF CMakeFiles/judy.dir/Judy_Word_Cascade.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Cascade.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Cascade.c [ 48%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Count.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Count.c.o -MF CMakeFiles/judy.dir/Judy_Word_Count.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Count.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Count.c [ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Decascade.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Decascade.c.o -MF CMakeFiles/judy.dir/Judy_Word_Decascade.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Decascade.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Decascade.c [ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Next.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Next.c.o -MF CMakeFiles/judy.dir/Judy_Word_Next.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Next.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Next.c [ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o -MF CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o.d -o CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_NextEmpty.c [ 49%] Building C object libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DJU_64BIT -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/klib/judy\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/.. -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-array-bounds -Wno-aggressive-loop-optimizations -g -std=c11 -fPIC -MD -MT libs/klib/judy/CMakeFiles/judy.dir/Judy_Word_Prev.c.o -MF CMakeFiles/judy.dir/Judy_Word_Prev.c.o.d -o CMakeFiles/judy.dir/Judy_Word_Prev.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/klib/judy/Judy_Word_Prev.c [ 49%] Linking C static library ../../../ilib/libjudy.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /usr/pkg/bin/cmake -P CMakeFiles/judy.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/klib/judy && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/judy.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../ilib/libjudy.a CMakeFiles/judy.dir/JudyHS.c.o CMakeFiles/judy.dir/JudyMalloc.c.o CMakeFiles/judy.dir/JudySL.c.o CMakeFiles/judy.dir/Judy_Bit.c.o CMakeFiles/judy.dir/Judy_Bit_Cascade.c.o CMakeFiles/judy.dir/Judy_Bit_Count.c.o CMakeFiles/judy.dir/Judy_Bit_Decascade.c.o CMakeFiles/judy.dir/Judy_Bit_Next.c.o CMakeFiles/judy.dir/Judy_Bit_NextEmpty.c.o CMakeFiles/judy.dir/Judy_Bit_Prev.c.o CMakeFiles/judy.dir/Judy_Word.c.o CMakeFiles/judy.dir/Judy_Word_Cascade.c.o CMakeFiles/judy.dir/Judy_Word_Count.c.o CMakeFiles/judy.dir/Judy_Word_Decascade.c.o CMakeFiles/judy.dir/Judy_Word_Next.c.o CMakeFiles/judy.dir/Judy_Word_NextEmpty.c.o CMakeFiles/judy.dir/Judy_Word_Prev.c.o /usr/bin/ranlib ../../../ilib/libjudy.a [ 49%] Built target judy /usr/bin/make -f libs/kns/CMakeFiles/kns.dir/build.make libs/kns/CMakeFiles/kns.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns/CMakeFiles/kns.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kns/CMakeFiles/kns.dir/build.make libs/kns/CMakeFiles/kns.dir/build [ 49%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-buffer.c.o -MF CMakeFiles/kns.dir/stream-from-buffer.c.o.d -o CMakeFiles/kns.dir/stream-from-buffer.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stream-from-buffer.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/kns_manager-ext.c.o -MF CMakeFiles/kns.dir/kns_manager-ext.c.o.d -o CMakeFiles/kns.dir/kns_manager-ext.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/kns_manager-ext.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/manager.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/manager.c.o -MF CMakeFiles/kns.dir/manager.c.o.d -o CMakeFiles/kns.dir/manager.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/manager.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/proxy.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/proxy.c.o -MF CMakeFiles/kns.dir/proxy.c.o.d -o CMakeFiles/kns.dir/proxy.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/proxy.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/stable-http-file.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/stable-http-file.c.o -MF CMakeFiles/kns.dir/stable-http-file.c.o.d -o CMakeFiles/kns.dir/stable-http-file.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stable-http-file.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/buffered-stream.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/buffered-stream.c.o -MF CMakeFiles/kns.dir/buffered-stream.c.o.d -o CMakeFiles/kns.dir/buffered-stream.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/buffered-stream.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/stream.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/stream.c.o -MF CMakeFiles/kns.dir/stream.c.o.d -o CMakeFiles/kns.dir/stream.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stream.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-files.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-files.c.o -MF CMakeFiles/kns.dir/stream-from-files.c.o.d -o CMakeFiles/kns.dir/stream-from-files.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stream-from-files.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/stream-from-streams.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/stream-from-streams.c.o -MF CMakeFiles/kns.dir/stream-from-streams.c.o.d -o CMakeFiles/kns.dir/stream-from-streams.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/stream-from-streams.c [ 50%] Building C object libs/kns/CMakeFiles/kns.dir/endpoint.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/endpoint.c.o -MF CMakeFiles/kns.dir/endpoint.c.o.d -o CMakeFiles/kns.dir/endpoint.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/endpoint.c [ 51%] Building C object libs/kns/CMakeFiles/kns.dir/tls.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/tls.c.o -MF CMakeFiles/kns.dir/tls.c.o.d -o CMakeFiles/kns.dir/tls.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/tls.c [ 51%] Building C object libs/kns/CMakeFiles/kns.dir/http-file.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/http-file.c.o -MF CMakeFiles/kns.dir/http-file.c.o.d -o CMakeFiles/kns.dir/http-file.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/http-file.c [ 51%] Building C object libs/kns/CMakeFiles/kns.dir/http-client.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/http-request.c.o -MF CMakeFiles/kns.dir/http-request.c.o.d -o CMakeFiles/kns.dir/http-request.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/http-request.c [ 51%] Building C object libs/kns/CMakeFiles/kns.dir/http-retrier.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g 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CMakeFiles/kns.dir/http.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/http.c [ 51%] Building C object libs/kns/CMakeFiles/kns.dir/unix/sysmgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/unix/sysmgr.c.o -MF CMakeFiles/kns.dir/unix/sysmgr.c.o.d -o CMakeFiles/kns.dir/unix/sysmgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix/sysmgr.c [ 51%] Building C object libs/kns/CMakeFiles/kns.dir/unix/syssock.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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libs/kns/CMakeFiles/kns.dir/unix/sysstream.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/mac/sysendpoint.c.o -MF CMakeFiles/kns.dir/mac/sysendpoint.c.o.d -o CMakeFiles/kns.dir/mac/sysendpoint.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/mac/sysendpoint.c [ 52%] Building C object libs/kns/CMakeFiles/kns.dir/mac/syspoll.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kns\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kns/CMakeFiles/kns.dir/mac/syspoll.c.o -MF CMakeFiles/kns.dir/mac/syspoll.c.o.d -o CMakeFiles/kns.dir/mac/syspoll.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kns/mac/syspoll.c [ 52%] Linking C static library ../../ilib/libkns.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kns && 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CMakeFiles/kns.dir/mac/sysendpoint.c.o CMakeFiles/kns.dir/mac/syspoll.c.o /usr/bin/ranlib ../../ilib/libkns.a [ 52%] Built target kns /usr/bin/make -f libs/kproc/CMakeFiles/kproc.dir/build.make libs/kproc/CMakeFiles/kproc.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc/CMakeFiles/kproc.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kproc/CMakeFiles/kproc.dir/build.make libs/kproc/CMakeFiles/kproc.dir/build [ 52%] Building C object libs/kproc/CMakeFiles/kproc.dir/task.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kproc/CMakeFiles/kproc.dir/bsd/syslock.c.o -MF CMakeFiles/kproc.dir/bsd/syslock.c.o.d -o CMakeFiles/kproc.dir/bsd/syslock.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd/syslock.c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd/syslock.c: In function 'KRWLockTimedAcquireShared': /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd/syslock.c:809:77: warning: comparison between 'enum RCObject' and 'enum RCTarget' [-Wenum-compare] if ( GetRCState ( rc ) == rcExhausted && GetRCObject ( rc ) == rcTimeout ) ^~ /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd/syslock.c: In function 'KRWLockTimedAcquireExcl': /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd/syslock.c:876:77: warning: comparison between 'enum RCObject' and 'enum RCTarget' [-Wenum-compare] if ( GetRCState ( rc ) == rcExhausted && GetRCObject ( rc ) == rcTimeout ) ^~ [ 53%] Building C object libs/kproc/CMakeFiles/kproc.dir/bsd/sysmgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/unix -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/kproc/CMakeFiles/kproc.dir/sem.c.o -MF CMakeFiles/kproc.dir/sem.c.o.d -o CMakeFiles/kproc.dir/sem.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc/sem.c [ 53%] Linking C static library ../../ilib/libkproc.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /usr/pkg/bin/cmake -P CMakeFiles/kproc.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kproc.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkproc.a CMakeFiles/kproc.dir/task.c.o CMakeFiles/kproc.dir/procmgr.c.o CMakeFiles/kproc.dir/unix/syscond.c.o CMakeFiles/kproc.dir/unix/systhread.c.o CMakeFiles/kproc.dir/unix/systimeout.c.o CMakeFiles/kproc.dir/bsd/syslock.c.o CMakeFiles/kproc.dir/bsd/sysmgr.c.o CMakeFiles/kproc.dir/sem.c.o /usr/bin/ranlib ../../ilib/libkproc.a [ 53%] Built target kproc /usr/bin/make -f libs/kproc/CMakeFiles/kq.dir/build.make libs/kproc/CMakeFiles/kq.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/kproc /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc/CMakeFiles/kq.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/kproc/CMakeFiles/kq.dir/build.make libs/kproc/CMakeFiles/kq.dir/build [ 53%] Building C object libs/kproc/CMakeFiles/kq.dir/queue.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/kproc && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/kproc\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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-std=c11 -fPIC -MD -MT libs/krypto/CMakeFiles/krypto.dir/cipher.c.o -MF CMakeFiles/krypto.dir/cipher.c.o.d -o CMakeFiles/krypto.dir/cipher.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/krypto/cipher.c [ 54%] Building C object libs/krypto/CMakeFiles/krypto.dir/aes_core.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/krypto && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/krypto/CMakeFiles/krypto.dir/aes-byte.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/krypto && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/krypto && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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Built target krypto /usr/bin/make -f libs/krypto/CMakeFiles/kryptotest.dir/build.make libs/krypto/CMakeFiles/kryptotest.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/krypto /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/krypto /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/krypto/CMakeFiles/kryptotest.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/krypto/CMakeFiles/kryptotest.dir/build.make libs/krypto/CMakeFiles/kryptotest.dir/build [ 55%] Building C object libs/krypto/CMakeFiles/kryptotest.dir/testcipher.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/krypto && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/krypto\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/kryptotest.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libkryptotest.a CMakeFiles/kryptotest.dir/testcipher.c.o /usr/bin/ranlib ../../ilib/libkryptotest.a [ 56%] Built target kryptotest /usr/bin/make -f libs/schema/CMakeFiles/schema.dir/build.make libs/schema/CMakeFiles/schema.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/schema /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema/CMakeFiles/schema.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/schema/CMakeFiles/schema.dir/build.make libs/schema/CMakeFiles/schema.dir/build [ 56%] Building CXX object libs/schema/CMakeFiles/schema.dir/AST.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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56%] Building CXX object libs/schema/CMakeFiles/schema.dir/AST_Expr.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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libs/schema/CMakeFiles/schema.dir/SchemaScanner.cpp.o -MF CMakeFiles/schema.dir/SchemaScanner.cpp.o.d -o CMakeFiles/schema.dir/SchemaScanner.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/schema/SchemaScanner.cpp [ 58%] Building CXX object libs/schema/CMakeFiles/schema.dir/Token.cpp.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema && /tmp/biology/sra-tools/work/.cwrapper/bin/c++ -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/schema\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -Wno-noexcept-type -g -std=c++11 -fPIC -fno-exceptions -Wno-unused-variable -MD -MT libs/schema/CMakeFiles/schema.dir/Token.cpp.o -MF CMakeFiles/schema.dir/Token.cpp.o.d -o CMakeFiles/schema.dir/Token.cpp.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/schema/Token.cpp [ 58%] Linking CXX static library ../../ilib/libschema.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema && /usr/pkg/bin/cmake -P CMakeFiles/schema.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/schema && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/schema.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libschema.a CMakeFiles/schema.dir/AST.cpp.o CMakeFiles/schema.dir/AST_Expr.cpp.o "CMakeFiles/schema.dir/ASTBuilder-db.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-func.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-phys.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-tbl.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-type.cpp.o" "CMakeFiles/schema.dir/ASTBuilder-view.cpp.o" CMakeFiles/schema.dir/ASTBuilder.cpp.o CMakeFiles/schema.dir/ErrorReport.cpp.o CMakeFiles/schema.dir/ParseTree.cpp.o "CMakeFiles/schema.dir/zz_schema-ast.cpp.o" "CMakeFiles/schema.dir/zz_schema-grammar.cpp.o" "CMakeFiles/schema.dir/zz_schema-lex.c.o" CMakeFiles/schema.dir/SchemaParser.cpp.o CMakeFiles/schema.dir/SchemaScanner.cpp.o CMakeFiles/schema.dir/Token.cpp.o /usr/bin/ranlib ../../ilib/libschema.a [ 58%] Built target schema /usr/bin/make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search/CMakeFiles/ksrch.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/search/CMakeFiles/ksrch.dir/build.make libs/search/CMakeFiles/ksrch.dir/build [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-dp.c.o -MF CMakeFiles/ksrch.dir/agrep-dp.c.o.d -o CMakeFiles/ksrch.dir/agrep-dp.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/agrep-dp.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myers.c.o -MF CMakeFiles/ksrch.dir/agrep-myers.c.o.d -o CMakeFiles/ksrch.dir/agrep-myers.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/agrep-myers.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -MF CMakeFiles/ksrch.dir/agrep-myersunltd.c.o.d -o CMakeFiles/ksrch.dir/agrep-myersunltd.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/agrep-myersunltd.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/agrep-wumanber.c.o -MF CMakeFiles/ksrch.dir/agrep-wumanber.c.o.d -o CMakeFiles/ksrch.dir/agrep-wumanber.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/agrep-wumanber.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-aho.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces 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CMakeFiles/ksrch.dir/fgrep-aho.c.o.d -o CMakeFiles/ksrch.dir/fgrep-aho.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/fgrep-aho.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -MF CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o.d -o CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/fgrep-boyermoore.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/fgrep-dumb.c.o -MF CMakeFiles/ksrch.dir/fgrep-dumb.c.o.d -o CMakeFiles/ksrch.dir/fgrep-dumb.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/fgrep-dumb.c [ 58%] Building C object libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/nucstrstr.c.o -MF CMakeFiles/ksrch.dir/nucstrstr.c.o.d -o CMakeFiles/ksrch.dir/nucstrstr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/nucstrstr.c [ 59%] Building C object libs/search/CMakeFiles/ksrch.dir/search.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/search.c.o -MF CMakeFiles/ksrch.dir/search.c.o.d -o CMakeFiles/ksrch.dir/search.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/search.c [ 59%] Building C object libs/search/CMakeFiles/ksrch.dir/sw-search.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/search\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/search/CMakeFiles/ksrch.dir/sw-search.c.o -MF CMakeFiles/ksrch.dir/sw-search.c.o.d -o CMakeFiles/ksrch.dir/sw-search.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/search/sw-search.c [ 59%] Linking C static library ../../ilib/libksrch.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /usr/pkg/bin/cmake -P CMakeFiles/ksrch.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/search && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/ksrch.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libksrch.a "CMakeFiles/ksrch.dir/agrep-dp.c.o" "CMakeFiles/ksrch.dir/agrep-myers.c.o" "CMakeFiles/ksrch.dir/agrep-myersunltd.c.o" "CMakeFiles/ksrch.dir/agrep-wumanber.c.o" "CMakeFiles/ksrch.dir/fgrep-aho.c.o" "CMakeFiles/ksrch.dir/fgrep-boyermoore.c.o" "CMakeFiles/ksrch.dir/fgrep-dumb.c.o" CMakeFiles/ksrch.dir/nucstrstr.c.o CMakeFiles/ksrch.dir/search.c.o "CMakeFiles/ksrch.dir/sw-search.c.o" /usr/bin/ranlib ../../ilib/libksrch.a [ 59%] Built target ksrch /usr/bin/make -f libs/sra/CMakeFiles/sradb.dir/build.make libs/sra/CMakeFiles/sradb.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra/CMakeFiles/sradb.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/sra/CMakeFiles/sradb.dir/build.make libs/sra/CMakeFiles/sradb.dir/build [ 59%] Building C object libs/sra/CMakeFiles/sradb.dir/sramgr-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/sramgr-cmn.c.o -MF CMakeFiles/sradb.dir/sramgr-cmn.c.o.d -o CMakeFiles/sradb.dir/sramgr-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sramgr-cmn.c [ 59%] Building C object libs/sra/CMakeFiles/sradb.dir/sratbl-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/sratbl-cmn.c.o -MF CMakeFiles/sradb.dir/sratbl-cmn.c.o.d -o CMakeFiles/sradb.dir/sratbl-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sratbl-cmn.c [ 59%] Building C object libs/sra/CMakeFiles/sradb.dir/sracol.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/sracol.c.o -MF CMakeFiles/sradb.dir/sracol.c.o.d -o CMakeFiles/sradb.dir/sracol.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sracol.c [ 59%] Building C object libs/sra/CMakeFiles/sradb.dir/types.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/types.c.o -MF CMakeFiles/sradb.dir/types.c.o.d -o CMakeFiles/sradb.dir/types.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/types.c [ 60%] Building C object libs/sra/CMakeFiles/sradb.dir/sracache.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/sracache.c.o -MF CMakeFiles/sradb.dir/sracache.c.o.d -o CMakeFiles/sradb.dir/sracache.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sracache.c [ 60%] Building C object libs/sra/CMakeFiles/sradb.dir/sramgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/sramgr.c.o -MF CMakeFiles/sradb.dir/sramgr.c.o.d -o CMakeFiles/sradb.dir/sramgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sramgr.c [ 60%] Building C object libs/sra/CMakeFiles/sradb.dir/sratbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/sradb.dir/sratbl.c.o -MF CMakeFiles/sradb.dir/sratbl.c.o.d -o CMakeFiles/sradb.dir/sratbl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sratbl.c [ 60%] Linking C static library ../../ilib/libsradb.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /usr/pkg/bin/cmake -P CMakeFiles/sradb.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/sradb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libsradb.a "CMakeFiles/sradb.dir/sramgr-cmn.c.o" "CMakeFiles/sradb.dir/sratbl-cmn.c.o" CMakeFiles/sradb.dir/sracol.c.o CMakeFiles/sradb.dir/types.c.o CMakeFiles/sradb.dir/sracache.c.o CMakeFiles/sradb.dir/sramgr.c.o CMakeFiles/sradb.dir/sratbl.c.o /usr/bin/ranlib ../../ilib/libsradb.a [ 60%] Built target sradb /usr/bin/make -f libs/sra/CMakeFiles/wsradb.dir/build.make libs/sra/CMakeFiles/wsradb.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra/CMakeFiles/wsradb.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/sra/CMakeFiles/wsradb.dir/build.make libs/sra/CMakeFiles/wsradb.dir/build [ 60%] Building C object libs/sra/CMakeFiles/wsradb.dir/sramgr-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/sramgr-cmn.c.o -MF CMakeFiles/wsradb.dir/sramgr-cmn.c.o.d -o CMakeFiles/wsradb.dir/sramgr-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sramgr-cmn.c [ 60%] Building C object libs/sra/CMakeFiles/wsradb.dir/sratbl-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/sratbl-cmn.c.o -MF CMakeFiles/wsradb.dir/sratbl-cmn.c.o.d -o CMakeFiles/wsradb.dir/sratbl-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sratbl-cmn.c [ 61%] Building C object libs/sra/CMakeFiles/wsradb.dir/sracol.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/sracol.c.o -MF CMakeFiles/wsradb.dir/sracol.c.o.d -o CMakeFiles/wsradb.dir/sracol.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sracol.c [ 61%] Building C object libs/sra/CMakeFiles/wsradb.dir/types.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/types.c.o -MF CMakeFiles/wsradb.dir/types.c.o.d -o CMakeFiles/wsradb.dir/types.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/types.c [ 61%] Building C object libs/sra/CMakeFiles/wsradb.dir/sracache.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/sracache.c.o -MF CMakeFiles/wsradb.dir/sracache.c.o.d -o CMakeFiles/wsradb.dir/sracache.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/sracache.c [ 61%] Building C object libs/sra/CMakeFiles/wsradb.dir/wsramgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/wsramgr.c.o -MF CMakeFiles/wsradb.dir/wsramgr.c.o.d -o CMakeFiles/wsradb.dir/wsramgr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/wsramgr.c [ 61%] Building C object libs/sra/CMakeFiles/wsradb.dir/wsratbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/wsradb.dir/wsratbl.c.o -MF CMakeFiles/wsradb.dir/wsratbl.c.o.d -o CMakeFiles/wsradb.dir/wsratbl.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/wsratbl.c [ 61%] Linking C static library ../../ilib/libwsradb.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /usr/pkg/bin/cmake -P CMakeFiles/wsradb.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/wsradb.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwsradb.a "CMakeFiles/wsradb.dir/sramgr-cmn.c.o" "CMakeFiles/wsradb.dir/sratbl-cmn.c.o" CMakeFiles/wsradb.dir/sracol.c.o CMakeFiles/wsradb.dir/types.c.o CMakeFiles/wsradb.dir/sracache.c.o CMakeFiles/wsradb.dir/wsramgr.c.o CMakeFiles/wsradb.dir/wsratbl.c.o /usr/bin/ranlib ../../ilib/libwsradb.a [ 61%] Built target wsradb /usr/bin/make -f libs/sra/CMakeFiles/srareader.dir/build.make libs/sra/CMakeFiles/srareader.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra/CMakeFiles/srareader.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/sra/CMakeFiles/srareader.dir/build.make libs/sra/CMakeFiles/srareader.dir/build [ 61%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-cmn.c.o -MF CMakeFiles/srareader.dir/reader-cmn.c.o.d -o CMakeFiles/srareader.dir/reader-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/reader-cmn.c [ 61%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-fastq.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-fastq.c.o -MF CMakeFiles/srareader.dir/reader-fastq.c.o.d -o CMakeFiles/srareader.dir/reader-fastq.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/reader-fastq.c [ 61%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-sff.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-sff.c.o -MF CMakeFiles/srareader.dir/reader-sff.c.o.d -o CMakeFiles/srareader.dir/reader-sff.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/reader-sff.c [ 61%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-illumina.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-illumina.c.o -MF CMakeFiles/srareader.dir/reader-illumina.c.o.d -o CMakeFiles/srareader.dir/reader-illumina.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/reader-illumina.c [ 61%] Building C object libs/sra/CMakeFiles/srareader.dir/reader-abi.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sra\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sra/CMakeFiles/srareader.dir/reader-abi.c.o -MF CMakeFiles/srareader.dir/reader-abi.c.o.d -o CMakeFiles/srareader.dir/reader-abi.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sra/reader-abi.c [ 62%] Linking C static library ../../ilib/libsrareader.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /usr/pkg/bin/cmake -P CMakeFiles/srareader.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sra && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/srareader.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libsrareader.a "CMakeFiles/srareader.dir/reader-cmn.c.o" "CMakeFiles/srareader.dir/reader-fastq.c.o" "CMakeFiles/srareader.dir/reader-sff.c.o" "CMakeFiles/srareader.dir/reader-illumina.c.o" "CMakeFiles/srareader.dir/reader-abi.c.o" /usr/bin/ranlib ../../ilib/libsrareader.a [ 62%] Built target srareader /usr/bin/make -f libs/sraxf/CMakeFiles/sraxf.dir/build.make libs/sraxf/CMakeFiles/sraxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf/CMakeFiles/sraxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/sraxf/CMakeFiles/sraxf.dir/build.make libs/sraxf/CMakeFiles/sraxf.dir/build [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/untyped.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/untyped.c.o -MF CMakeFiles/sraxf.dir/untyped.c.o.d -o CMakeFiles/sraxf.dir/untyped.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/untyped.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/v0-decompress-init.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces 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libs/sraxf/CMakeFiles/sraxf.dir/v0-funcs.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/bio-start.c.o -MF CMakeFiles/sraxf.dir/bio-start.c.o.d -o CMakeFiles/sraxf.dir/bio-start.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/bio-start.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/dynamic-454-read-descriptor.c [ 62%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/format-spot-name.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/read-desc.c.o -MF CMakeFiles/sraxf.dir/read-desc.c.o.d -o CMakeFiles/sraxf.dir/read-desc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/read-desc.c [ 64%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/rotate.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/sraxf/CMakeFiles/sraxf.dir/swap.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/sraxf/CMakeFiles/sraxf.dir/qual4_decode.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/read-seg-from-readn.c.o -MF CMakeFiles/sraxf.dir/read-seg-from-readn.c.o.d -o CMakeFiles/sraxf.dir/read-seg-from-readn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/read-seg-from-readn.c [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/rewrite-spot-name.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces 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libs/sraxf/CMakeFiles/sraxf.dir/process-position.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/spot-filter.c.o -MF CMakeFiles/sraxf.dir/spot-filter.c.o.d -o CMakeFiles/sraxf.dir/spot-filter.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/spot-filter.c [ 65%] Building C object libs/sraxf/CMakeFiles/sraxf.dir/syn_quality.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/sraxf.dir/syn_quality.c.o -MF CMakeFiles/sraxf.dir/syn_quality.c.o.d -o CMakeFiles/sraxf.dir/syn_quality.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/syn_quality.c [ 66%] Linking C static library ../../ilib/libsraxf.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /usr/pkg/bin/cmake -P CMakeFiles/sraxf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/sraxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libsraxf.a CMakeFiles/sraxf.dir/untyped.c.o "CMakeFiles/sraxf.dir/v0-decompress-init.c.o" "CMakeFiles/sraxf.dir/v0-decompress.c.o" "CMakeFiles/sraxf.dir/v0-funcs.c.o" "CMakeFiles/sraxf.dir/bio-start.c.o" "CMakeFiles/sraxf.dir/dynamic-454-read-descriptor.c.o" "CMakeFiles/sraxf.dir/format-spot-name.c.o" "CMakeFiles/sraxf.dir/extract-name_coord.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-454.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-illumina.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-abi.c.o" "CMakeFiles/sraxf.dir/tokenize-spot_name-helicos.c.o" 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libs/sraxf/CMakeFiles/wsraxf.dir/build.make libs/sraxf/CMakeFiles/wsraxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf/CMakeFiles/wsraxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/sraxf/CMakeFiles/wsraxf.dir/build.make libs/sraxf/CMakeFiles/wsraxf.dir/build [ 66%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/untyped.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress-init.c.o -MF CMakeFiles/wsraxf.dir/v0-decompress-init.c.o.d -o CMakeFiles/wsraxf.dir/v0-decompress-init.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/v0-decompress-init.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/v0-decompress.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/sraxf/CMakeFiles/wsraxf.dir/v0-funcs.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/bio-start.c.o -MF CMakeFiles/wsraxf.dir/bio-start.c.o.d -o CMakeFiles/wsraxf.dir/bio-start.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/bio-start.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/dynamic-454-read-descriptor.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/dynamic-454-read-descriptor.c [ 67%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/format-spot-name.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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-DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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libs/sraxf/CMakeFiles/wsraxf.dir/swap.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/denormalize.c.o -MF CMakeFiles/wsraxf.dir/denormalize.c.o.d -o CMakeFiles/wsraxf.dir/denormalize.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/denormalize.c [ 69%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/normalize.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/sraxf/CMakeFiles/wsraxf.dir/qual4_decode.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/sraxf/CMakeFiles/wsraxf.dir/process-position.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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CMakeFiles/wsraxf.dir/fpcodec.c.o.d -o CMakeFiles/wsraxf.dir/fpcodec.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/fpcodec.c [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/index_lookup.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/spot-filter.c.o -MF CMakeFiles/wsraxf.dir/spot-filter.c.o.d -o CMakeFiles/wsraxf.dir/spot-filter.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/spot-filter.c [ 70%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/syn_quality.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/sraxf/CMakeFiles/wsraxf.dir/extract-name_fmt.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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-o CMakeFiles/wsraxf.dir/stats.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/stats.c [ 71%] Building C object libs/sraxf/CMakeFiles/wsraxf.dir/stats_quality.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/sraxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/sraxf/CMakeFiles/wsraxf.dir/set-rna-flag.c.o -MF CMakeFiles/wsraxf.dir/set-rna-flag.c.o.d -o CMakeFiles/wsraxf.dir/set-rna-flag.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/sraxf/set-rna-flag.c [ 71%] Linking C static library ../../ilib/libwsraxf.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /usr/pkg/bin/cmake -P CMakeFiles/wsraxf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/sraxf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/wsraxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwsraxf.a CMakeFiles/wsraxf.dir/untyped.c.o "CMakeFiles/wsraxf.dir/v0-decompress-init.c.o" 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb/CMakeFiles/vdb.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/vdb/CMakeFiles/vdb.dir/build.make libs/vdb/CMakeFiles/vdb.dir/build [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/dbmgr-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/vdb.dir/dbmgr-cmn.c.o -MF CMakeFiles/vdb.dir/dbmgr-cmn.c.o.d -o CMakeFiles/vdb.dir/dbmgr-cmn.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/dbmgr-cmn.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-tok.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/vdb.dir/schema-parse.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-type.c.o -MF CMakeFiles/vdb.dir/schema-type.c.o.d -o CMakeFiles/vdb.dir/schema-type.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/schema-type.c [ 71%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema-func.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/vdb.dir/schema-prod.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/schema-tbl.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/schema-dump.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/vdb.dir/schema-int.c.o -MF CMakeFiles/vdb.dir/schema-int.c.o.d -o CMakeFiles/vdb.dir/schema-int.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/schema-int.c [ 72%] Building C object libs/vdb/CMakeFiles/vdb.dir/schema.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/vdb.dir/linker-int.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/database-depend.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/vdb.dir/database-load.c.o -MF CMakeFiles/vdb.dir/database-load.c.o.d -o CMakeFiles/vdb.dir/database-load.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/database-load.c [ 73%] Building C object libs/vdb/CMakeFiles/vdb.dir/table-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/vdb.dir/table-load.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/prod-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/blob-headers.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/split.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/meta-value.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/vdb.dir/parameter-read.c.o -MF CMakeFiles/vdb.dir/parameter-read.c.o.d -o CMakeFiles/vdb.dir/parameter-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/parameter-read.c [ 76%] Building C object libs/vdb/CMakeFiles/vdb.dir/redimension.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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libs/vdb/CMakeFiles/vdb.dir/report-vdb.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/cursor-view.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/linker.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/vdb.dir/phys.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb/CMakeFiles/wvdb.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/vdb/CMakeFiles/wvdb.dir/build.make libs/vdb/CMakeFiles/wvdb.dir/build [ 78%] Building C object libs/vdb/CMakeFiles/wvdb.dir/dbmgr-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/wvdb.dir/schema-tok.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/schema-func.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/schema-prod.c.o -MF CMakeFiles/wvdb.dir/schema-prod.c.o.d -o CMakeFiles/wvdb.dir/schema-prod.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/schema-prod.c [ 79%] Building C object libs/vdb/CMakeFiles/wvdb.dir/schema-expr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/wvdb.dir/schema-eval.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/schema-db.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/schema.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/database-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/database-depend.c.o -MF CMakeFiles/wvdb.dir/database-depend.c.o.d -o CMakeFiles/wvdb.dir/database-depend.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/database-depend.c [ 80%] Building C object libs/vdb/CMakeFiles/wvdb.dir/database-load.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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libs/vdb/CMakeFiles/wvdb.dir/prod-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/prod-expr.c.o -MF CMakeFiles/wvdb.dir/prod-expr.c.o.d -o CMakeFiles/wvdb.dir/prod-expr.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/prod-expr.c [ 81%] Building C object libs/vdb/CMakeFiles/wvdb.dir/prod-func.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/wvdb.dir/phys-cmn.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/blob-headers.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/page-map.c.o -MF CMakeFiles/wvdb.dir/page-map.c.o.d -o CMakeFiles/wvdb.dir/page-map.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/page-map.c [ 82%] Building C object libs/vdb/CMakeFiles/wvdb.dir/row-id.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/wvdb.dir/row-len.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/split.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/meta-value.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/range-validate.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/parameter-read.c.o -MF CMakeFiles/wvdb.dir/parameter-read.c.o.d -o CMakeFiles/wvdb.dir/parameter-read.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/parameter-read.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/redimension.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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-D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/transpose.c.o -MF CMakeFiles/wvdb.dir/transpose.c.o.d -o CMakeFiles/wvdb.dir/transpose.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/transpose.c [ 83%] Building C object libs/vdb/CMakeFiles/wvdb.dir/delta_average.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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object libs/vdb/CMakeFiles/wvdb.dir/report-vdb.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/bytecode.c.o -MF CMakeFiles/wvdb.dir/bytecode.c.o.d -o CMakeFiles/wvdb.dir/bytecode.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/bytecode.c [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/view.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/wvdb.dir/cursor-view.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Wall -Wno-unused-function -g -std=c11 -fPIC -Wstrict-aliasing=0 -MD -MT libs/vdb/CMakeFiles/wvdb.dir/cursor-table.c.o -MF CMakeFiles/wvdb.dir/cursor-table.c.o.d -o CMakeFiles/wvdb.dir/cursor-table.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vdb/cursor-table.c [ 84%] Building C object libs/vdb/CMakeFiles/wvdb.dir/wdbmgr.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vdb/CMakeFiles/wvdb.dir/wlinker.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vdb/CMakeFiles/wvdb.dir/wcursor.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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Building C object libs/vdb/CMakeFiles/wvdb.dir/meta-append.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vdb && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vdb\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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CMakeFiles/wvdb.dir/wcolumn.c.o CMakeFiles/wvdb.dir/wprod.c.o CMakeFiles/wvdb.dir/wphys.c.o "CMakeFiles/wvdb.dir/meta-write.c.o" "CMakeFiles/wvdb.dir/meta-attr-write.c.o" "CMakeFiles/wvdb.dir/meta-append.c.o" CMakeFiles/wvdb.dir/index_insert.c.o /usr/bin/ranlib ../../ilib/libwvdb.a [ 85%] Built target wvdb /usr/bin/make -f libs/vfs/CMakeFiles/vfs.dir/build.make libs/vfs/CMakeFiles/vfs.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs/CMakeFiles/vfs.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/vfs/CMakeFiles/vfs.dir/build.make libs/vfs/CMakeFiles/vfs.dir/build [ 85%] Building C object libs/vfs/CMakeFiles/vfs.dir/jwt.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/jwt.c [ 85%] Building C object libs/vfs/CMakeFiles/vfs.dir/names4-response.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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libs/vfs/CMakeFiles/vfs.dir/manager.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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-std=c11 -fPIC -MD -MT libs/vfs/CMakeFiles/vfs.dir/resolver.c.o -MF CMakeFiles/vfs.dir/resolver.c.o.d -o CMakeFiles/vfs.dir/resolver.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/resolver.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/resolver-3.0.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vfs/CMakeFiles/vfs.dir/resolver-3.0.c.o -MF CMakeFiles/vfs.dir/resolver-3.0.c.o.d -o CMakeFiles/vfs.dir/resolver-3.0.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/resolver-3.0.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/sdl-response.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vfs/CMakeFiles/vfs.dir/sdl-response.c.o -MF CMakeFiles/vfs.dir/sdl-response.c.o.d -o CMakeFiles/vfs.dir/sdl-response.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/sdl-response.c [ 86%] Building C object libs/vfs/CMakeFiles/vfs.dir/services.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk 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-std=c11 -fPIC -MD -MT libs/vfs/CMakeFiles/vfs.dir/SraDesc.c.o -MF CMakeFiles/vfs.dir/SraDesc.c.o.d -o CMakeFiles/vfs.dir/SraDesc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/SraDesc.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/srv-response.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/srv-response.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/path.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vfs/CMakeFiles/vfs.dir/unix/syskeyring.c.o -MF CMakeFiles/vfs.dir/unix/syskeyring.c.o.d -o CMakeFiles/vfs.dir/unix/syskeyring.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/unix/syskeyring.c [ 87%] Building C object libs/vfs/CMakeFiles/vfs.dir/unix/syspath.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vfs\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vfs/CMakeFiles/vfs.dir/unix/syspath.c.o -MF CMakeFiles/vfs.dir/unix/syspath.c.o.d -o CMakeFiles/vfs.dir/unix/syspath.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vfs/unix/syspath.c [ 87%] Linking C static library ../../ilib/libvfs.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /usr/pkg/bin/cmake -P CMakeFiles/vfs.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vfs && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/vfs.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvfs.a CMakeFiles/vfs.dir/jwt.c.o "CMakeFiles/vfs.dir/names4-response.c.o" CMakeFiles/vfs.dir/manager.c.o "CMakeFiles/vfs.dir/remote-services.c.o" CMakeFiles/vfs.dir/resolver.c.o "CMakeFiles/vfs.dir/resolver-3.0.c.o" "CMakeFiles/vfs.dir/sdl-response.c.o" CMakeFiles/vfs.dir/services.c.o "CMakeFiles/vfs.dir/services-cache.c.o" CMakeFiles/vfs.dir/SraDesc.c.o "CMakeFiles/vfs.dir/srv-response.c.o" CMakeFiles/vfs.dir/path.c.o CMakeFiles/vfs.dir/unix/syskeyring.c.o CMakeFiles/vfs.dir/unix/syspath.c.o /usr/bin/ranlib ../../ilib/libvfs.a [ 87%] Built target vfs /usr/bin/make -f libs/vxf/CMakeFiles/vxf.dir/build.make libs/vxf/CMakeFiles/vxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf/CMakeFiles/vxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/vxf/CMakeFiles/vxf.dir/build.make libs/vxf/CMakeFiles/vxf.dir/build [ 87%] Building C object libs/vxf/CMakeFiles/vxf.dir/ceil.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/vxf.dir/ceil.c.o -MF CMakeFiles/vxf.dir/ceil.c.o.d -o 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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CMakeFiles/vxf.dir/echo.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/echo.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/exists.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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CMakeFiles/vxf.dir/paste.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/paste.c [ 88%] Building C object libs/vxf/CMakeFiles/vxf.dir/round.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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CMakeFiles/vxf.dir/deriv.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/deriv.c [ 90%] Building C object libs/vxf/CMakeFiles/vxf.dir/integral.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/vxf.dir/subtract-row-id.c.o -MF CMakeFiles/vxf.dir/subtract-row-id.c.o.d -o CMakeFiles/vxf.dir/subtract-row-id.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/subtract-row-id.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/irzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/vxf.dir/outlier-encoder.c.o -MF CMakeFiles/vxf.dir/outlier-encoder.c.o.d -o CMakeFiles/vxf.dir/outlier-encoder.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/outlier-encoder.c [ 91%] Building C object libs/vxf/CMakeFiles/vxf.dir/outlier-decoder.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vxf/CMakeFiles/vxf.dir/bunzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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libs/vxf/CMakeFiles/vxf.dir/strtonum.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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Building C object libs/vxf/CMakeFiles/vxf.dir/lower-case-tech-reads.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 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-DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/vxf.dir/unzstd.c.o -MF CMakeFiles/vxf.dir/unzstd.c.o.d -o CMakeFiles/vxf.dir/unzstd.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/unzstd.c [ 92%] Linking C static library ../../ilib/libvxf.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /usr/pkg/bin/cmake -P CMakeFiles/vxf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/vxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libvxf.a CMakeFiles/vxf.dir/ceil.c.o CMakeFiles/vxf.dir/clip.c.o CMakeFiles/vxf.dir/cut.c.o CMakeFiles/vxf.dir/echo.c.o CMakeFiles/vxf.dir/exists.c.o CMakeFiles/vxf.dir/floor.c.o CMakeFiles/vxf.dir/paste.c.o CMakeFiles/vxf.dir/round.c.o CMakeFiles/vxf.dir/trunc.c.o CMakeFiles/vxf.dir/unzip.c.o CMakeFiles/vxf.dir/map.c.o CMakeFiles/vxf.dir/funzip.c.o "CMakeFiles/vxf.dir/vec-sum.c.o" CMakeFiles/vxf.dir/min.c.o CMakeFiles/vxf.dir/max.c.o CMakeFiles/vxf.dir/rldecode.c.o CMakeFiles/vxf.dir/pack.c.o CMakeFiles/vxf.dir/unpack.c.o CMakeFiles/vxf.dir/izip.c.o CMakeFiles/vxf.dir/iunzip.c.o CMakeFiles/vxf.dir/diff.c.o CMakeFiles/vxf.dir/sum.c.o CMakeFiles/vxf.dir/bit_or.c.o CMakeFiles/vxf.dir/trim.c.o CMakeFiles/vxf.dir/deriv.c.o CMakeFiles/vxf.dir/integral.c.o CMakeFiles/vxf.dir/integral_0.c.o CMakeFiles/vxf.dir/delta.c.o CMakeFiles/vxf.dir/undelta.c.o "CMakeFiles/vxf.dir/add-row-id.c.o" "CMakeFiles/vxf.dir/subtract-row-id.c.o" CMakeFiles/vxf.dir/irzip.c.o CMakeFiles/vxf.dir/rand_4na_2na.c.o "CMakeFiles/vxf.dir/outlier-encoder.c.o" "CMakeFiles/vxf.dir/outlier-decoder.c.o" CMakeFiles/vxf.dir/bunzip.c.o "CMakeFiles/vxf.dir/simple-sub-select.c.o" CMakeFiles/vxf.dir/extract_token.c.o CMakeFiles/vxf.dir/strtonum.c.o CMakeFiles/vxf.dir/sprintf.c.o "CMakeFiles/vxf.dir/wgs-tokenize-accession.c.o" "CMakeFiles/vxf.dir/lower-case-tech-reads.c.o" CMakeFiles/vxf.dir/unzstd.c.o /usr/bin/ranlib ../../ilib/libvxf.a [ 92%] Built target vxf /usr/bin/make -f libs/vxf/CMakeFiles/wvxf.dir/build.make libs/vxf/CMakeFiles/wvxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf/CMakeFiles/wvxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/vxf/CMakeFiles/wvxf.dir/build.make libs/vxf/CMakeFiles/wvxf.dir/build [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/ceil.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/cut.c.o -MF CMakeFiles/wvxf.dir/cut.c.o.d -o CMakeFiles/wvxf.dir/cut.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/cut.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/echo.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/floor.c.o -MF CMakeFiles/wvxf.dir/floor.c.o.d -o CMakeFiles/wvxf.dir/floor.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/floor.c [ 93%] Building C object libs/vxf/CMakeFiles/wvxf.dir/paste.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/trunc.c.o -MF CMakeFiles/wvxf.dir/trunc.c.o.d -o CMakeFiles/wvxf.dir/trunc.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/trunc.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/funzip.c.o -MF CMakeFiles/wvxf.dir/funzip.c.o.d -o CMakeFiles/wvxf.dir/funzip.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/funzip.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/vec-sum.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/min.c.o -MF CMakeFiles/wvxf.dir/min.c.o.d -o CMakeFiles/wvxf.dir/min.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/min.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/max.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/max.c.o -MF CMakeFiles/wvxf.dir/max.c.o.d -o CMakeFiles/wvxf.dir/max.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/max.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rldecode.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/rldecode.c.o -MF CMakeFiles/wvxf.dir/rldecode.c.o.d -o CMakeFiles/wvxf.dir/rldecode.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/rldecode.c [ 94%] Building C object libs/vxf/CMakeFiles/wvxf.dir/pack.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/unpack.c.o -MF CMakeFiles/wvxf.dir/unpack.c.o.d -o CMakeFiles/wvxf.dir/unpack.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/unpack.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/izip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/izip.c.o -MF CMakeFiles/wvxf.dir/izip.c.o.d -o CMakeFiles/wvxf.dir/izip.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/izip.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/iunzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/iunzip.c.o -MF CMakeFiles/wvxf.dir/iunzip.c.o.d -o CMakeFiles/wvxf.dir/iunzip.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/iunzip.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/diff.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/diff.c.o -MF CMakeFiles/wvxf.dir/diff.c.o.d -o CMakeFiles/wvxf.dir/diff.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/diff.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/sum.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/sum.c.o -MF CMakeFiles/wvxf.dir/sum.c.o.d -o CMakeFiles/wvxf.dir/sum.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/sum.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/bit_or.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/trim.c.o -MF CMakeFiles/wvxf.dir/trim.c.o.d -o CMakeFiles/wvxf.dir/trim.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/trim.c [ 95%] Building C object libs/vxf/CMakeFiles/wvxf.dir/deriv.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/integral_0.c.o -MF CMakeFiles/wvxf.dir/integral_0.c.o.d -o CMakeFiles/wvxf.dir/integral_0.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/integral_0.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/delta.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/add-row-id.c.o -MF CMakeFiles/wvxf.dir/add-row-id.c.o.d -o CMakeFiles/wvxf.dir/add-row-id.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/add-row-id.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/subtract-row-id.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/subtract-row-id.c.o -MF CMakeFiles/wvxf.dir/subtract-row-id.c.o.d -o CMakeFiles/wvxf.dir/subtract-row-id.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/subtract-row-id.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/irzip.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/rand_4na_2na.c.o -MF CMakeFiles/wvxf.dir/rand_4na_2na.c.o.d -o CMakeFiles/wvxf.dir/rand_4na_2na.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/rand_4na_2na.c [ 96%] Building C object libs/vxf/CMakeFiles/wvxf.dir/outlier-encoder.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vxf/CMakeFiles/wvxf.dir/outlier-decoder.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall 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libs/vxf/CMakeFiles/wvxf.dir/extract_token.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/strtonum.c.o -MF CMakeFiles/wvxf.dir/strtonum.c.o.d -o CMakeFiles/wvxf.dir/strtonum.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/strtonum.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/sprintf.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext 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libs/vxf/CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/vxf/CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o -MF CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o.d -o CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/lower-case-tech-reads.c [ 97%] Building C object libs/vxf/CMakeFiles/wvxf.dir/unzstd.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces 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/tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix 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CMakeFiles/wvxf.dir/fzip.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/vxf/fzip.c [ 98%] Building C object libs/vxf/CMakeFiles/wvxf.dir/rlencode.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/vxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/vxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd 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-I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g 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CMakeFiles/wvxf.dir/map.c.o CMakeFiles/wvxf.dir/funzip.c.o "CMakeFiles/wvxf.dir/vec-sum.c.o" CMakeFiles/wvxf.dir/min.c.o CMakeFiles/wvxf.dir/max.c.o CMakeFiles/wvxf.dir/rldecode.c.o CMakeFiles/wvxf.dir/pack.c.o CMakeFiles/wvxf.dir/unpack.c.o CMakeFiles/wvxf.dir/izip.c.o CMakeFiles/wvxf.dir/iunzip.c.o CMakeFiles/wvxf.dir/diff.c.o CMakeFiles/wvxf.dir/sum.c.o CMakeFiles/wvxf.dir/bit_or.c.o CMakeFiles/wvxf.dir/trim.c.o CMakeFiles/wvxf.dir/deriv.c.o CMakeFiles/wvxf.dir/integral.c.o CMakeFiles/wvxf.dir/integral_0.c.o CMakeFiles/wvxf.dir/delta.c.o CMakeFiles/wvxf.dir/undelta.c.o "CMakeFiles/wvxf.dir/add-row-id.c.o" "CMakeFiles/wvxf.dir/subtract-row-id.c.o" CMakeFiles/wvxf.dir/irzip.c.o CMakeFiles/wvxf.dir/rand_4na_2na.c.o "CMakeFiles/wvxf.dir/outlier-encoder.c.o" "CMakeFiles/wvxf.dir/outlier-decoder.c.o" CMakeFiles/wvxf.dir/bunzip.c.o "CMakeFiles/wvxf.dir/simple-sub-select.c.o" CMakeFiles/wvxf.dir/extract_token.c.o CMakeFiles/wvxf.dir/strtonum.c.o CMakeFiles/wvxf.dir/sprintf.c.o "CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o" "CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o" CMakeFiles/wvxf.dir/unzstd.c.o CMakeFiles/wvxf.dir/zip.c.o CMakeFiles/wvxf.dir/bzip.c.o CMakeFiles/wvxf.dir/fzip.c.o CMakeFiles/wvxf.dir/rlencode.c.o CMakeFiles/wvxf.dir/checksum.c.o CMakeFiles/wvxf.dir/zstd.c.o /usr/bin/ranlib ../../ilib/libwvxf.a [ 98%] Built target wvxf /usr/bin/make -f libs/wgsxf/CMakeFiles/wgsxf.dir/build.make libs/wgsxf/CMakeFiles/wgsxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/wgsxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf/CMakeFiles/wgsxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/wgsxf/CMakeFiles/wgsxf.dir/build.make libs/wgsxf/CMakeFiles/wgsxf.dir/build [ 99%] Building C object libs/wgsxf/CMakeFiles/wgsxf.dir/build_scaffold.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /usr/pkg/bin/cmake -P CMakeFiles/wgsxf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/wgsxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwgsxf.a CMakeFiles/wgsxf.dir/build_scaffold.c.o CMakeFiles/wgsxf.dir/build_read_type.c.o /usr/bin/ranlib ../../ilib/libwgsxf.a [ 99%] Built target wgsxf /usr/bin/make -f libs/wgsxf/CMakeFiles/wwgsxf.dir/build.make libs/wgsxf/CMakeFiles/wwgsxf.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/wgsxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf/CMakeFiles/wwgsxf.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/wgsxf/CMakeFiles/wwgsxf.dir/build.make libs/wgsxf/CMakeFiles/wwgsxf.dir/build [ 99%] Building C object libs/wgsxf/CMakeFiles/wwgsxf.dir/build_scaffold.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces 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CMakeFiles/wwgsxf.dir/build_scaffold.c.o.d -o CMakeFiles/wwgsxf.dir/build_scaffold.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/wgsxf/build_scaffold.c [ 99%] Building C object libs/wgsxf/CMakeFiles/wwgsxf.dir/build_read_type.c.o cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /tmp/biology/sra-tools/work/.cwrapper/bin/cc -DBSD -DDEBUG -DHAVE_Z128 -DLONG_DOUBLE_IS_NOT_R128 -DPKGNAME=bsd64 -DUNIX -D_ARCH_BITS=64 -D_DEBUGGING -D_LIBRARY -D__mod__=\"libs/wgsxf\" -Dx86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/bsd -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/os/unix -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/../ngs/ngs-sdk -I/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/ext/mbedtls -Wall -Wno-unused-function -g -std=c11 -fPIC -MD -MT libs/wgsxf/CMakeFiles/wwgsxf.dir/build_read_type.c.o -MF CMakeFiles/wwgsxf.dir/build_read_type.c.o.d -o CMakeFiles/wwgsxf.dir/build_read_type.c.o -c /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/wgsxf/build_read_type.c [ 99%] Linking C static library ../../ilib/libwwgsxf.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /usr/pkg/bin/cmake -P CMakeFiles/wwgsxf.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/wgsxf && /usr/pkg/bin/cmake -E cmake_link_script CMakeFiles/wwgsxf.dir/link.txt --verbose=1 /usr/bin/ar qc ../../ilib/libwwgsxf.a CMakeFiles/wwgsxf.dir/build_scaffold.c.o CMakeFiles/wwgsxf.dir/build_read_type.c.o /usr/bin/ranlib ../../ilib/libwwgsxf.a [ 99%] Built target wwgsxf /usr/bin/make -f libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/build.make libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/depend cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build && /usr/pkg/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/libs/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ncbi-vdb /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/DependInfo.cmake "--color=" /usr/bin/make -f libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/build.make libs/ncbi-vdb/CMakeFiles/ncbi-vdb.dir/build [ 99%] Linking CXX static library ../../lib/libncbi-vdb.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ncbi-vdb && /usr/pkg/bin/cmake -P CMakeFiles/ncbi-vdb.dir/cmake_clean_target.cmake cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ncbi-vdb && /usr/pkg/bin/cmake -E cmake_link_script 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/tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libncbi-vdb.a libncbi-vdb-static.a cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ncbi-vdb && /usr/pkg/bin/cmake -E copy /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/ncbi/default.kfg /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/bin/ncbi/default.kfg cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/libs/ncbi-vdb && /usr/pkg/bin/cmake -E copy /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces/kfg/ncbi/default.kfg /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib/ncbi/default.kfg cd 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../vxf/CMakeFiles/wvxf.dir/sprintf.c.o "../vxf/CMakeFiles/wvxf.dir/wgs-tokenize-accession.c.o" "../vxf/CMakeFiles/wvxf.dir/lower-case-tech-reads.c.o" ../vxf/CMakeFiles/wvxf.dir/unzstd.c.o ../vxf/CMakeFiles/wvxf.dir/zip.c.o ../vxf/CMakeFiles/wvxf.dir/bzip.c.o ../vxf/CMakeFiles/wvxf.dir/fzip.c.o ../vxf/CMakeFiles/wvxf.dir/rlencode.c.o ../vxf/CMakeFiles/wvxf.dir/checksum.c.o ../vxf/CMakeFiles/wvxf.dir/zstd.c.o -lm -ldl -lpthread cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && rm -f libncbi-wvdb.so.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && mv libncbi-wvdb.so libncbi-wvdb.so.3.0.6 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libncbi-wvdb.so.3.0.6 libncbi-wvdb.so.3 cd /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib && ln -f -s libncbi-wvdb.so.3 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INFO: [replace-interpreter] Nothing changed in tools/external/ref-variation/test/ref-variation.sh. => Fixing CMAKE_MODULE_PATH in CMakeLists.txt INFO: [subst.mk:cmake] Nothing changed in "CMakeLists.txt". => Checking for portability problems in extracted files CMAKE_VERSION=3.27.4 -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /tmp/biology/sra-tools/work/.cwrapper/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /tmp/biology/sra-tools/work/.cwrapper/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done BUILD_TOOLS_INTERNAL=OFF BUILD_TOOLS_LOADERS=OFF BUILD_TOOLS_TEST_TOOLS=OFF TOOLS_ONLY=ON VERSION=3.0.6 -- Performing Test COMPILER_OPTION_SSE42_SUPPORTED -- Performing Test COMPILER_OPTION_SSE42_SUPPORTED - Success -- Found FLEX: /usr/bin/flex (found suitable version "2.6.4", minimum required is "2.6") -- Found BISON: /tmp/biology/sra-tools/work/.tools/bin/bison (found suitable version "3.8.2", minimum required is "3") -- Found LibXml2: /usr/pkg/lib/libxml2.so (found version "2.10.4") LIBXML2_INCLUDE_DIR=/usr/pkg/include/libxml2 LIBXML2_LIBRARIES=/usr/pkg/lib/libxml2.so -- Could NOT find Java (missing: Java_JAVA_EXECUTABLE Java_JAVAC_EXECUTABLE Java_JAR_EXECUTABLE Java_JAVADOC_EXECUTABLE Java_JAVAH_EXECUTABLE Development) -- Could NOT find Python3 (missing: Python3_EXECUTABLE Interpreter) Using ncbi-vdb interfaces: /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/interfaces Using ncbi-vdb binary libraries: /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/ncbi-vdb/build/lib -- Looking for C++ include mbedtls/md.h -- Looking for C++ include mbedtls/md.h - not found RUN_SANITIZER_TESTS: OFF -- Configuring done (4.6s) -- Generating done (1.0s) -- Build files have been written to: /tmp/biology/sra-tools/work/sra-tools-984f1493e8612cd59a269569bf8c06e25e4e604c/cmake-pkgsrc-build => Rewrite cmake Dependencies files