=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for scipy-1.9.3.tar.gz => Checksum SHA512 OK for scipy-1.9.3.tar.gz ===> Installing dependencies for py310-scipy-1.9.3 ========================================================================== The following variables will affect the build process of this package, py310-scipy-1.9.3. Their current value is shown below: * PKGSRC_BLAS_TYPES = netlib openblas openblas_pthread openblas_openmp * PYTHON_VERSION_DEFAULT = 310 Based on these variables, the following variables have been set: * BLAS_INCLUDES = -I/usr/pkg/include/netlib * BLAS_LIBS = -lblas * BLAS_TYPE = netlib * CBLAS_LIBS = -lcblas -lblas * LAPACKE_LIBS = -llapacke -llapack -lblas * LAPACK_LIBS = -llapack -lblas * PYPACKAGE = python310 You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency py310-setuptools-[0-9]*: found py310-setuptools-67.7.2 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency boost-headers-1.82.*: found boost-headers-1.82.0 => Build dependency boost-headers>=1.77.0nb1: found boost-headers-1.82.0 => Build dependency py310-pybind11>=2.5.0: found py310-pybind11-2.10.4 => Build dependency py310-pythran>=0.10.0: found py310-pythran-0.13.0 => Full dependency py310-pybind11-[0-9]*: found py310-pybind11-2.10.4 => Full dependency py310-pythran>=0.9.11: found py310-pythran-0.13.0 => Full dependency gcc7>=7.5.0nb6: found gcc7-7.5.0nb6 => Full dependency py310-cython>=0.12.1: found py310-cython-0.29.34 => Full dependency fftw>=3.3.10nb1: found fftw-3.3.10nb1 => Full dependency py310-numpy>=1.20.3nb1: found py310-numpy-1.24.3 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for py310-scipy-1.9.3 ===> Extracting for py310-scipy-1.9.3 ===> Patching for py310-scipy-1.9.3 => Applying pkgsrc patches for py310-scipy-1.9.3 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_spatial_ckdtree_src_ckdtree__decl.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_spatial_ckdtree_src_ckdtree__decl.h,v 1.2 2022/05/27 16:59:50 tnn Exp $ | |Many errors like this: |scipy/spatial/ckdtree/src/query_pairs.cxx:110:16: error: argument to '__builtin_prefetch' must be a constant integer | |--- scipy/spatial/ckdtree/src/ckdtree_decl.h.orig 2022-04-29 21:14:38.041529700 +0000 |+++ scipy/spatial/ckdtree/src/ckdtree_decl.h -------------------------- Patching file scipy/spatial/ckdtree/src/ckdtree_decl.h using Plan A... Hunk #1 succeeded at 10. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special___logit.h => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_special___logit.h Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_special___logit.h,v 1.2 2022/05/13 09:49:31 tnn Exp $ | |py-scipy: work around undefined PLT symbol "log1pl" on NetBSD | |--- scipy/special/_logit.h.orig 2022-01-29 22:59:08.000000000 +0000 |+++ scipy/special/_logit.h -------------------------- Patching file scipy/special/_logit.h using Plan A... Hunk #1 succeeded at 31. Hunk #2 succeeded at 51. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-scipy/patches/patch-scipy_stats__unuran_setup.py Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-scipy_stats__unuran_setup.py,v 1.1 2022/07/30 16:13:48 he Exp $ | |On NetBSD/powerpc, you can't build with _ISOC99_SOURCE defined, |the include of deep down in the python headers will fail |with undefined types. | |--- ./scipy/stats/_unuran/setup.py.orig 2022-05-16 12:36:53.864307900 +0000 |+++ ./scipy/stats/_unuran/setup.py -------------------------- Patching file ./scipy/stats/_unuran/setup.py using Plan A... Hunk #1 succeeded at 95. done ===> Creating toolchain wrappers for py310-scipy-1.9.3 ===> Configuring for py310-scipy-1.9.3 => Checking for portability problems in extracted files /bin/rm -f -r /tmp/math/py-scipy/work/scipy-1.9.3/scipy/_lib/boost/boost /bin/ln -s /tmp/math/py-scipy/work/.buildlink/include/boost /tmp/math/py-scipy/work/scipy-1.9.3/scipy/_lib/boost/boost