=> Bootstrap dependency digest>=20211023: found digest-20220214 => Checksum BLAKE2s OK for Molsketch-0.8.0-src.tar.gz => Checksum SHA512 OK for Molsketch-0.8.0-src.tar.gz ===> Installing dependencies for molsketch-0.8.0nb1 ========================================================================== The following variables will affect the build process of this package, molsketch-0.8.0nb1. Their current value is shown below: * JPEG_DEFAULT = jpeg * SSLBASE = /usr * SSLCERTBUNDLE (not defined) * SSLCERTS = /etc/openssl/certs * SSLDIR = /etc/openssl * SSLKEYS = /etc/openssl/private Based on these variables, the following variables have been set: * JPEGBASE (defined, but empty) * JPEG_TYPE = jpeg You may want to abort the process now with CTRL-C and change the value of variables in the first group before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency qt5-qttools-[0-9]*: found qt5-qttools-5.15.9nb1 => Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.74.6 => Tool dependency mktools-[0-9]*: found mktools-20220614 => Tool dependency cmake>=2.8.1nb1: found cmake-3.26.3nb1 => Tool dependency pkgconf-[0-9]*: found pkgconf-1.9.4nb1 => Tool dependency cwrappers>=20150314: found cwrappers-20220403 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency x11-links>=1.35: found x11-links-1.35 => Build dependency eigen3>=3.1.2: found eigen3-3.4.0 => Full dependency openbabel>=3.1.1nb16: found openbabel-3.1.1nb16 => Full dependency hicolor-icon-theme>=0.9nb1: found hicolor-icon-theme-0.17nb1 => Full dependency qt5-qtbase>=5.15.9nb1: found qt5-qtbase-5.15.9nb1 => Full dependency qt5-qtsvg>=5.15.9nb1: found qt5-qtsvg-5.15.9nb1 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Overriding tools for molsketch-0.8.0nb1 ===> Extracting for molsketch-0.8.0nb1 ===> Patching for molsketch-0.8.0nb1 => Applying pkgsrc patches for molsketch-0.8.0nb1 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/molsketch/patches/patch-libmolsketch_CMakeLists.txt => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/molsketch/patches/patch-libmolsketch_CMakeLists.txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-libmolsketch_CMakeLists.txt,v 1.1 2023/04/18 08:49:21 pin Exp $ | |Update C++ standard from 14 to 17 for CMake. |https://github.com/hvennekate/Molsketch/commit/2726563113a3db1af0c667ec496a8569fa8ea8cd | |--- libmolsketch/CMakeLists.txt.orig 2023-04-14 16:04:22.000000000 +0000 |+++ libmolsketch/CMakeLists.txt -------------------------- Patching file libmolsketch/CMakeLists.txt using Plan A... Hunk #1 succeeded at 24. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/molsketch/patches/patch-molsketch_CMakeLists.txt => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/molsketch/patches/patch-molsketch_CMakeLists.txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-molsketch_CMakeLists.txt,v 1.1 2023/04/18 08:49:21 pin Exp $ | |Update C++ standard from 14 to 17 for CMake. |https://github.com/hvennekate/Molsketch/commit/2726563113a3db1af0c667ec496a8569fa8ea8cd | |--- molsketch/CMakeLists.txt.orig 2023-04-14 16:04:22.000000000 +0000 |+++ molsketch/CMakeLists.txt -------------------------- Patching file molsketch/CMakeLists.txt using Plan A... Hunk #1 succeeded at 33. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/molsketch/patches/patch-obabeliface_CMakeLists.txt => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/molsketch/patches/patch-obabeliface_CMakeLists.txt Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-obabeliface_CMakeLists.txt,v 1.1 2023/04/18 08:49:21 pin Exp $ | |Update C++ standard from 14 to 17 for CMake. |https://github.com/hvennekate/Molsketch/commit/2726563113a3db1af0c667ec496a8569fa8ea8cd | |--- obabeliface/CMakeLists.txt.orig 2023-04-14 16:04:22.000000000 +0000 |+++ obabeliface/CMakeLists.txt -------------------------- Patching file obabeliface/CMakeLists.txt using Plan A... Hunk #1 succeeded at 17. done ===> Creating toolchain wrappers for molsketch-0.8.0nb1 ===> Configuring for molsketch-0.8.0nb1 => Generating pkg-config file for builtin expat package. => Generating pkg-config files for builtin xz package. => Fixing CMAKE_MODULE_PATH in CMakeLists.txt INFO: [subst.mk:cmake] Nothing changed in "CMakeLists.txt". => Checking for portability problems in extracted files -- The C compiler identification is GNU 7.5.0 -- The CXX compiler identification is GNU 7.5.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /tmp/biology/molsketch/work/.cwrapper/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /tmp/biology/molsketch/work/.cwrapper/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- ======= Welcome to Molsketch build ======= -- Sources in: /tmp/biology/molsketch/work/Molsketch-0.8.0 -- Installation settings and corresponding cmake variables (use "-D =" to change): -- "Global prefix": MSK_PREFIX = /usr/pkg -- "Executable destination dir": MSK_INSTALL_BINS = /usr/pkg/bin -- "Headers destination dir": MSK_INSTALL_INCLUDES = /usr/pkg/include -- "Libraries (64bit) destination dir": MSK_INSTALL_LIBS64 = /usr/pkg/lib -- "Libraries (32bit) destination dir": MSK_INSTALL_LIBS = /usr/pkg/lib -- "Build OpenBabel interface": MSK_OBABELIFACE = true -- "Build static application": MSK_STATIC_LIB = false -- Found PkgConfig: /tmp/biology/molsketch/work/.tools/bin/pkg-config (found version "1.9.4") -- Checking for one of the modules 'openbabel-3' -- Configuring done (2.5s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_MANDIR MSK_INSTALL_DOCS MSK_INSTALL_PREFIX -- Build files have been written to: /tmp/biology/molsketch/work/Molsketch-0.8.0 => Rewrite cmake Dependencies files