=> Bootstrap dependency digest>=20211023: found digest-20220214
=> Checksum BLAKE2s OK for phylip-3.69.tar.gz
=> Checksum SHA512 OK for phylip-3.69.tar.gz
===> Installing dependencies for phylip-3.69
=> Tool dependency mktools-[0-9]*: found mktools-20220614
=> Tool dependency cwrappers>=20150314: found cwrappers-20220403
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency x11-links>=1.35: found x11-links-1.35
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for phylip-3.69
===> Extracting for phylip-3.69
===> Patching for phylip-3.69
=> Applying pkgsrc patches for phylip-3.69
=> Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/phylip/patches/patch-aa
**************************************
Ignoring patch file /amd/pkgsrc/CHROOT/P/pkgsrc/biology/phylip/patches/patch-aa: invalid checksum
**************************************
ERROR: Patching failed due to modified or broken patch file(s):
ERROR: 	/amd/pkgsrc/CHROOT/P/pkgsrc/biology/phylip/patches/patch-aa
*** Error code 1

Stop.
make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/biology/phylip
*** Error code 1

Stop.
make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/biology/phylip