=> Bootstrap dependency digest>=20211023: found digest-20220214 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py311-tables-3.7.0nb1 (cd /tmp/math/py-tables/work/tables-3.7.0/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\ DL_LDFLAGS=\ -pthread DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.11 CC=gcc CFLAGS=-O2\ -fPIC\ -D_FORTIFY_SOURCE=2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python3.11 CPPFLAGS=-I/usr/pkg/include/netlib\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python3.11 CXX=c++ CXXFLAGS=-O2\ -fPIC\ -D_FORTIFY_SOURCE=2\ -I/usr/include\ -I/usr/pkg/include\ -I/usr/pkg/include/python3.11 COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-Wl,-zrelro\ -L/usr/lib\ -Wl,-R/usr/lib\ -L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib LINKER_RPATH_FLAG=-R PATH=/tmp/math/py-tables/work/.cwrapper/bin:/tmp/math/py-tables/work/.buildlink/bin:/tmp/math/py-tables/work/.gcc/bin:/tmp/math/py-tables/work/.tools/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/pkg/bin:/usr/X11R7/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc HOME=/tmp/math/py-tables/work/.home CWRAPPERS_CONFIG_DIR=/tmp/math/py-tables/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/X11R7 PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 775 INSTALL_INFO= MAKEINFO=/tmp/math/py-tables/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/tmp/math/py-tables/work/.tools/bin/itstool GDBUS_CODEGEN=/tmp/math/py-tables/work/.tools/bin/gdbus-codegen PKG_CONFIG=/tmp/math/py-tables/work/.tools/bin/pkg-config PKG_CONFIG_LIBDIR=/tmp/math/py-tables/work/.buildlink/lib/pkgconfig:/tmp/math/py-tables/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/tmp/math/py-tables/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/tmp/math/py-tables/work/.cwrapper/config /usr/pkg/bin/python3.11 setup.py build --blosc=/usr/pkg --bzip2=/usr --hdf5=/usr/pkg --lzo=/usr/pkg -j4) * Using Python 3.11.0 (main, Nov 4 2022, 18:32:17) [GCC 7.4.0] * Found cython 0.29.32 * USE_PKGCONFIG: True * Found HDF5 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Found LZO 2 headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. * Skipping detection of LZO 1 since LZO 2 has already been found. * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib``. * Found blosc headers at ``/usr/pkg/include``, library at ``/usr/pkg/lib``. running build running build_py creating build creating build/lib.netbsd-9.0-amd64-cpython-311 creating build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/__init__.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/array.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/atom.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/attributeset.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/carray.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/conditions.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/description.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/earray.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/exceptions.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/expression.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/file.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/filters.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/flavor.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/group.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/idxutils.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/index.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/indexes.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/leaf.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/link.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/node.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/parameters.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/path.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/registry.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/req_versions.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/table.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/undoredo.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/unimplemented.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/utils.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/vlarray.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables creating build/lib.netbsd-9.0-amd64-cpython-311/tables/misc copying tables/misc/__init__.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/misc copying tables/misc/enum.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/misc copying tables/misc/proxydict.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/misc creating build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes copying tables/nodes/__init__.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes copying tables/nodes/filenode.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes creating build/lib.netbsd-9.0-amd64-cpython-311/tables/scripts copying tables/scripts/__init__.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/scripts copying tables/scripts/pt2to3.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/scripts copying tables/scripts/ptdump.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/scripts copying tables/scripts/ptrepack.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/scripts copying tables/scripts/pttree.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/scripts creating build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/__init__.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/check_leaks.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/common.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/create_backcompat_indexes.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_all.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_array.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_attributes.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_aux.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_backcompat.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_basics.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_carray.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_create.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_do_undo.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_earray.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_enum.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_expression.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_garbage.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_hdf5compat.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_index_backcompat.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_indexes.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_indexvalues.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_links.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_lists.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_nestedtypes.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_numpy.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_queries.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_suite.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_tables.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_tablesMD.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_timestamps.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_timetype.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_tree.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_types.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_utils.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_vlarray.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests creating build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes/tests copying tables/nodes/tests/__init__.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes/tests copying tables/nodes/tests/test_filenode.py -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes/tests running egg_info writing tables.egg-info/PKG-INFO writing dependency_links to tables.egg-info/dependency_links.txt writing entry points to tables.egg-info/entry_points.txt writing requirements to tables.egg-info/requires.txt writing top-level names to tables.egg-info/top_level.txt reading manifest file 'tables.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'VERSION' warning: no files found matching '*.inc' under directory 'c-blosc/blosc' warning: no files found matching '*.conf' under directory 'doc' warning: no files found matching '*.*_t' under directory 'doc' warning: no files found matching '*.gif' under directory 'doc/html' warning: no files found matching '*' under directory 'doc/sphinxext' warning: no previously-included files matching '*' found under directory 'doc/build' warning: no files found matching '*.h5' under directory 'bench' adding license file 'LICENSE.txt' writing manifest file 'tables.egg-info/SOURCES.txt' copying tables/_comp_bzip2.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/_comp_bzip2.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/_comp_lzo.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/_comp_lzo.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/definitions.pxd -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/hdf5extension.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/hdf5extension.pxd -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/hdf5extension.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/indexesextension.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/indexesextension.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/linkextension.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/linkextension.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/lrucacheextension.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/lrucacheextension.pxd -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/lrucacheextension.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/tableextension.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/tableextension.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/utilsextension.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/utilsextension.pxd -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/utilsextension.pyx -> build/lib.netbsd-9.0-amd64-cpython-311/tables copying tables/tests/Table2_1_lzo_nrv2e_shuffle.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/Tables_lzo1.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/Tables_lzo1_shuffle.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/Tables_lzo2.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/Tables_lzo2_shuffle.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/array_mdatom.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/attr-u16.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/blosc_bigendian.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/bug-idx.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/create-nested-type.c -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/elink.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/elink2.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/ex-noattr.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/flavored_vlarrays-format1.6.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/float.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/idx-std-1.x.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/indexes_2_0.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/indexes_2_1.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/issue_368.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/issue_560.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/itemsize.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/matlab_file.mat -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/nested-type-with-gaps.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/non-chunked-table.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/oldflavor_numeric.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/out_of_order_types.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/python2.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/python3.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/scalar.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/slink.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_SDSextendible.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_compound_chunked.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_enum.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_f64be.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_f64le.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_i32be.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_i32le.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_i64be.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_i64le.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/smpl_unsupptype.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_ref_array1.mat -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_ref_array2.mat -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/test_szip.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/time-table-vlarray-1_x.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/times-nested-be.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/vlstr_attr.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/vlunicode_endian.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/zerodim-attrs-1.3.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/tests/zerodim-attrs-1.4.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/tests copying tables/nodes/tests/test_filenode.dat -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes/tests copying tables/nodes/tests/test_filenode.xbm -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes/tests copying tables/nodes/tests/test_filenode_v1.h5 -> build/lib.netbsd-9.0-amd64-cpython-311/tables/nodes/tests running build_ext building 'tables.utilsextension' extension creating build/temp.netbsd-9.0-amd64-cpython-311 creating build/temp.netbsd-9.0-amd64-cpython-311/hdf5-blosc creating build/temp.netbsd-9.0-amd64-cpython-311/hdf5-blosc/src creating build/temp.netbsd-9.0-amd64-cpython-311/src creating build/temp.netbsd-9.0-amd64-cpython-311/tables gcc -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -I/usr/pkg/include/netlib -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/pkg/lib/python3.11/site-packages/numpy/core/include -I/usr/pkg/include/python3.11 -c hdf5-blosc/src/blosc_filter.c -o build/temp.netbsd-9.0-amd64-cpython-311/hdf5-blosc/src/blosc_filter.o -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION gcc -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -I/usr/pkg/include/netlib -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/pkg/lib/python3.11/site-packages/numpy/core/include -I/usr/pkg/include/python3.11 -c src/H5ARRAY.c -o build/temp.netbsd-9.0-amd64-cpython-311/src/H5ARRAY.o -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION gcc -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -I/usr/pkg/include/netlib -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/pkg/lib/python3.11/site-packages/numpy/core/include -I/usr/pkg/include/python3.11 -c src/H5ATTR.c -o build/temp.netbsd-9.0-amd64-cpython-311/src/H5ATTR.o -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION gcc -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -I/usr/pkg/include/netlib -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/pkg/lib/python3.11/site-packages/numpy/core/include -I/usr/pkg/include/python3.11 -c src/utils.c -o build/temp.netbsd-9.0-amd64-cpython-311/src/utils.o -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION gcc -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -I/usr/pkg/include/netlib -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -fPIC -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -DHAVE_BLOSC_LIB=1 -Ihdf5-blosc/src -I/usr/pkg/lib/python3.11/site-packages/numpy/core/include -I/usr/pkg/include/python3.11 -c tables/utilsextension.c -o build/temp.netbsd-9.0-amd64-cpython-311/tables/utilsextension.o -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -I/usr/pkg/include/python3.11 -Isrc -DH5_USE_18_API -DH5Acreate_vers=2 -DH5Aiterate_vers=2 -DH5Dcreate_vers=2 -DH5Dopen_vers=2 -DH5Eclear_vers=2 -DH5Eprint_vers=2 -DH5Epush_vers=2 -DH5Eset_auto_vers=2 -DH5Eget_auto_vers=2 -DH5Ewalk_vers=2 -DH5E_auto_t_vers=2 -DH5Gcreate_vers=2 -DH5Gopen_vers=2 -DH5Pget_filter_vers=2 -DH5Pget_filter_by_id_vers=2 -DH5Tarray_create_vers=2 -DH5Tget_array_dims_vers=2 -DH5Z_class_t_vers=2 -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION tables/utilsextension.c: In function '__pyx_pf_6tables_14utilsextension_38which_class': tables/utilsextension.c:8032:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_2 = (((__pyx_v_maxdims[__pyx_v_i]) == -1LL) != 0); ^~ tables/utilsextension.c: In function '__pyx_pf_6tables_14utilsextension_56hdf5_to_np_nested_type': tables/utilsextension.c:12367:33: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { ^ tables/utilsextension.c: In function '__pyx_f_6tables_14utilsextension_load_reference': tables/utilsextension.c:15186:35: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) { ^ tables/utilsextension.c:15413:52: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] __pyx_t_3 = (((__pyx_v_maxdims[__pyx_v_j]) == -1LL) != 0); ^~ tables/utilsextension.c: In function '__Pyx_PyErr_GetTopmostException': tables/utilsextension.c:22030:23: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) && ^~~~~~~~ exc_value tables/utilsextension.c:22030:53: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? while ((exc_info->exc_type == NULL || exc_info->exc_type == Py_None) && ^~~~~~~~ exc_value tables/utilsextension.c: In function '__Pyx__ExceptionSave': tables/utilsextension.c:22044:23: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? *type = exc_info->exc_type; ^~~~~~~~ exc_value tables/utilsextension.c:22046:19: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' *tb = exc_info->exc_traceback; ^~ tables/utilsextension.c: In function '__Pyx__ExceptionReset': tables/utilsextension.c:22060:26: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? tmp_type = exc_info->exc_type; ^~~~~~~~ exc_value tables/utilsextension.c:22062:22: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' tmp_tb = exc_info->exc_traceback; ^~ tables/utilsextension.c:22063:15: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? exc_info->exc_type = type; ^~~~~~~~ exc_value tables/utilsextension.c:22065:13: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' exc_info->exc_traceback = tb; ^~ tables/utilsextension.c: In function '__Pyx__GetException': tables/utilsextension.c:22147:30: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? tmp_type = exc_info->exc_type; ^~~~~~~~ exc_value tables/utilsextension.c:22149:26: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' tmp_tb = exc_info->exc_traceback; ^~ tables/utilsextension.c:22150:19: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? exc_info->exc_type = local_type; ^~~~~~~~ exc_value tables/utilsextension.c:22152:17: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' exc_info->exc_traceback = local_tb; ^~ tables/utilsextension.c: In function '__Pyx_PyBytes_Equals': tables/utilsextension.c:22201:13: warning: 'ob_shash' is deprecated [-Wdeprecated-declarations] hash1 = ((PyBytesObject*)s1)->ob_shash; ^~~~~ In file included from /tmp/math/py-tables/work/.buildlink/include/python3.11/bytesobject.h:62:0, from /tmp/math/py-tables/work/.buildlink/include/python3.11/Python.h:50, from tables/utilsextension.c:19: /tmp/math/py-tables/work/.buildlink/include/python3.11/cpython/bytesobject.h:7:35: note: declared here Py_DEPRECATED(3.11) Py_hash_t ob_shash; ^~~~~~~~ tables/utilsextension.c:22202:13: warning: 'ob_shash' is deprecated [-Wdeprecated-declarations] hash2 = ((PyBytesObject*)s2)->ob_shash; ^~~~~ In file included from /tmp/math/py-tables/work/.buildlink/include/python3.11/bytesobject.h:62:0, from /tmp/math/py-tables/work/.buildlink/include/python3.11/Python.h:50, from tables/utilsextension.c:19: /tmp/math/py-tables/work/.buildlink/include/python3.11/cpython/bytesobject.h:7:35: note: declared here Py_DEPRECATED(3.11) Py_hash_t ob_shash; ^~~~~~~~ tables/utilsextension.c: In function '__Pyx__ExceptionSwap': tables/utilsextension.c:22347:26: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? tmp_type = exc_info->exc_type; ^~~~~~~~ exc_value tables/utilsextension.c:22349:22: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' tmp_tb = exc_info->exc_traceback; ^~ tables/utilsextension.c:22350:15: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_type'; did you mean 'exc_value'? exc_info->exc_type = *type; ^~~~~~~~ exc_value tables/utilsextension.c:22352:13: error: '_PyErr_StackItem {aka struct _err_stackitem}' has no member named 'exc_traceback' exc_info->exc_traceback = *tb; ^~ tables/utilsextension.c: In function '__Pyx_AddTraceback': tables/utilsextension.c:445:62: error: dereferencing pointer to incomplete type 'PyFrameObject {aka struct _frame}' #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno) ^ tables/utilsextension.c:23020:5: note: in expansion of macro '__Pyx_PyFrame_SetLineNumber' __Pyx_PyFrame_SetLineNumber(py_frame, py_line); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ error: command '/tmp/math/py-tables/work/.cwrapper/bin/gcc' failed with exit code 1 *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-tables *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-tables