=> Bootstrap dependency digest>=20211023: found digest-20211023 ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for py310-rpy-2.9.1nb2 (cd /tmp/math/py-rpy/work/rpy2-2.9.1/ && /usr/bin/env USETOOLS=no PTHREAD_CFLAGS=\ -pthread\ PTHREAD_LDFLAGS=\ -pthread PTHREAD_LIBS= PTHREADBASE=/usr DL_CFLAGS=\ -pthread\ DL_LDFLAGS=\ -pthread DL_LIBS= NPY_BLAS_LIBS=-lblas NPY_LAPACK_LIBS=-llapack\ -lblas NPY_CBLAS_LIBS=-lcblas\ -lblas PYTHON=/usr/pkg/bin/python3.10 CC=gcc CFLAGS=-O2\ -fPIC\ -D_FORTIFY_SOURCE=2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.10\ -I/usr/include/readline CPPFLAGS=-I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.10\ -I/usr/include/readline CXX=c++ CXXFLAGS=-O2\ -fPIC\ -D_FORTIFY_SOURCE=2\ -I/usr/pkg/include\ -I/usr/include\ -I/usr/pkg/include/python3.10\ -I/usr/include/readline COMPILER_RPATH_FLAG=-Wl,-R F77=gfortran FC=gfortran FFLAGS=-O LANG=C LC_ALL=C LC_COLLATE=C LC_CTYPE=C LC_MESSAGES=C LC_MONETARY=C LC_NUMERIC=C LC_TIME=C LDFLAGS=-L/usr/pkg/lib\ -Wl,-R/usr/pkg/lib\ -L/usr/lib\ -Wl,-R/usr/lib LINKER_RPATH_FLAG=-R PATH=/tmp/math/py-rpy/work/.cwrapper/bin:/tmp/math/py-rpy/work/.buildlink/bin:/tmp/math/py-rpy/work/.gfortran/bin:/tmp/math/py-rpy/work/.gcc/bin:/tmp/math/py-rpy/work/.tools/bin:/usr/pkg/bin:/usr/bin:/bin:/usr/pkg/bin:/usr/local/bin:/usr/pkg/bin:/usr/X11R7/bin PREFIX=/usr/pkg MAKELEVEL=0 CONFIG_SITE= PKG_SYSCONFDIR=/usr/pkg/etc CXXCPP=cpp HOME=/tmp/math/py-rpy/work/.home CWRAPPERS_CONFIG_DIR=/tmp/math/py-rpy/work/.cwrapper/config CPP=cpp LOCALBASE=/usr/pkg X11BASE=/usr/X11R7 PKGMANDIR=man PKGINFODIR=info PKGGNUDIR=gnu/ MAKECONF=/dev/null OBJECT_FMT=ELF USETOOLS=no BSD_INSTALL_PROGRAM=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL_MAN=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 644 BSD_INSTALL=/usr/bin/install BSD_INSTALL_PROGRAM_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_SCRIPT_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_LIB_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_DATA_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_MAN_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 755 BSD_INSTALL_GAME=/usr/bin/install\ -c\ -s\ -o\ pbulk\ -g\ wheel\ -m\ 2555 BSD_INSTALL_GAME_DATA=/usr/bin/install\ -c\ -o\ pbulk\ -g\ wheel\ -m\ 664 BSD_INSTALL_GAME_DIR=/usr/bin/install\ -d\ -o\ pbulk\ -g\ wheel\ -m\ 775 INSTALL_INFO= MAKEINFO=/tmp/math/py-rpy/work/.tools/bin/makeinfo FLEX= BISON= ITSTOOL=/tmp/math/py-rpy/work/.tools/bin/itstool GDBUS_CODEGEN=/tmp/math/py-rpy/work/.tools/bin/gdbus-codegen PKG_CONFIG= PKG_CONFIG_LIBDIR=/tmp/math/py-rpy/work/.buildlink/lib/pkgconfig:/tmp/math/py-rpy/work/.buildlink/share/pkgconfig PKG_CONFIG_LOG=/tmp/math/py-rpy/work/.pkg-config.log PKG_CONFIG_PATH= CWRAPPERS_CONFIG_DIR=/tmp/math/py-rpy/work/.cwrapper/config /usr/pkg/bin/python3.10 setup.py build -j4) R version 4.1.2 (2021-11-01) -- "Bird Hippie" /usr/pkg/lib/R/bin/R CMD config --ldflags /usr/pkg/lib/R/bin/R CMD config --cppflags Compilation parameters for rpy2's C components: include_dirs = ['/usr/pkg/lib/R/include'] library_dirs = ['/usr/pkg/lib', '/usr/lib', '/usr/X11R7/lib', '/usr/pkg/lib/R/lib', '/usr/pkg/lib'] libraries = ['R', 'pcre2-8', 'lzma', 'bz2', 'z', 'rt', 'm', 'iconv'] extra_link_args = ['-Wl,--export-dynamic', '-fopenmp', '-Wl,-R/usr/lib', '-Wl,-R/usr/pkg/lib', '-pthread', '-Wl,-R/usr/X11R7/lib', '-Wl,-R/usr/pkg/lib/R/lib', '-Wl,-R/usr/pkg/lib'] running build running build_py creating build creating build/lib.netbsd-9.0-amd64-3.10 creating build/lib.netbsd-9.0-amd64-3.10/rpy2 copying ./rpy/rpy_classic.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2 copying ./rpy/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2 copying ./rpy/tests_rpy_classic.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2 copying ./rpy/situation.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2 copying ./rpy/tests.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2 creating build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike copying ./rpy/rlike/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike copying ./rpy/rlike/functional.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike copying ./rpy/rlike/container.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike copying ./rpy/rlike/indexing.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike creating build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike/tests copying ./rpy/rlike/tests/test_container.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike/tests copying ./rpy/rlike/tests/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike/tests copying ./rpy/rlike/tests/test_functional.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike/tests copying ./rpy/rlike/tests/test_indexing.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rlike/tests creating build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface copying ./rpy/rinterface/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface creating build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVector.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Sexp.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpEnvironment.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_EmbeddedR.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_Device.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpExtPtr.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpClosure.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpSymbol.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests copying ./rpy/rinterface/tests/test_SexpVectorNumeric.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/tests creating build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/packages_utils.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/packages.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/numpy2ri.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/pandas2ri.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/functions.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/constants.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/methods.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/help.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/language.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/conversion.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/vectors.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/environments.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects copying ./rpy/robjects/robject.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects creating build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testEnvironment.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testRObject.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testPackages.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testHelp.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testRobjects.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testMethods.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testLanguage.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testArray.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testNumpyConversions.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testFormula.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testFunction.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testPandasConversions.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testDataFrame.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests copying ./rpy/robjects/tests/testVector.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/tests creating build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/test_dplyr.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/dplyr.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/grdevices.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/tidyr.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/ggplot2.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib copying ./rpy/robjects/lib/grid.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib creating build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_dplyr.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_ggplot2.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib/tests copying ./rpy/robjects/lib/tests/test_grdevices.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/robjects/lib/tests creating build/lib.netbsd-9.0-amd64-3.10/rpy2/interactive copying ./rpy/interactive/packages.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/interactive copying ./rpy/interactive/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/interactive copying ./rpy/interactive/process_revents.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/interactive creating build/lib.netbsd-9.0-amd64-3.10/rpy2/interactive/tests copying ./rpy/interactive/tests/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/interactive/tests creating build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython copying ./rpy/ipython/html.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython copying ./rpy/ipython/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython copying ./rpy/ipython/ggplot.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython copying ./rpy/ipython/rmagic.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython creating build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython/tests copying ./rpy/ipython/tests/__init__.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython/tests copying ./rpy/ipython/tests/test_rmagic.py -> build/lib.netbsd-9.0-amd64-3.10/rpy2/ipython/tests running build_clib building 'r_utils' library creating build/temp.netbsd-9.0-amd64-3.10 creating build/temp.netbsd-9.0-amd64-3.10/rpy creating build/temp.netbsd-9.0-amd64-3.10/rpy/rinterface gcc -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -fPIC -I./rpy/rinterface -I/usr/pkg/lib/R/include -c ./rpy/rinterface/r_utils.c -o build/temp.netbsd-9.0-amd64-3.10/./rpy/rinterface/r_utils.o ar rcs build/temp.netbsd-9.0-amd64-3.10/libr_utils.a build/temp.netbsd-9.0-amd64-3.10/./rpy/rinterface/r_utils.o running build_ext R version 4.1.2 (2021-11-01) -- "Bird Hippie" building 'rpy2.rinterface._rinterface' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/usr/pkg/lib/R/include -I/usr/pkg/include/python3.10 -c ./rpy/rinterface/_rinterface.c -o build/temp.netbsd-9.0-amd64-3.10/./rpy/rinterface/_rinterface.o ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_WriteConsoleEx': ./rpy/rinterface/_rinterface.c:349:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:369:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] result = PyEval_CallObject(consolecallback, arglist); ^~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ShowMessage': ./rpy/rinterface/_rinterface.c:420:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:440:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] result = PyEval_CallObject(showMessageCallback, arglist); ^~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ReadConsole': ./rpy/rinterface/_rinterface.c:489:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:513:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] result = PyEval_CallObject(readConsoleCallback, arglist); ^~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_FlushConsole': ./rpy/rinterface/_rinterface.c:626:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:631:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] PyEval_CallObject(flushConsoleCallback, NULL); ^~~~~~~~~~~~~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ResetConsole': ./rpy/rinterface/_rinterface.c:660:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:666:5: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] PyEval_CallObject(resetConsoleCallback, NULL); ^~~~~~~~~~~~~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ChooseFile': ./rpy/rinterface/_rinterface.c:710:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:725:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] result = PyEval_CallObject(chooseFileCallback, arglist); ^~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_ShowFiles': ./rpy/rinterface/_rinterface.c:800:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./rpy/rinterface/_rinterface.c:52:0: ./rpy/rinterface/_rinterface.h:58:13: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if (rbool == NA_LOGICAL) { \ ^ ./rpy/rinterface/_rinterface.c:819:3: note: in expansion of macro 'RPY_PY_FROM_RBOOL' RPY_PY_FROM_RBOOL(py_del, del); ^~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:859:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] result = PyEval_CallObject(showFilesCallback, arglist); ^~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'EmbeddedR_CleanUp': ./rpy/rinterface/_rinterface.c:933:3: warning: 'PyEval_ThreadsInitialized' is deprecated [-Wdeprecated-declarations] const int is_threaded = PyEval_ThreadsInitialized(); ^~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:121:36: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(int) PyEval_ThreadsInitialized(void); ^~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c:943:3: warning: 'PyEval_CallObjectWithKeywords' is deprecated [-Wdeprecated-declarations] PyObject *result = PyEval_CallObject(cleanUpCallback, arglist); ^~~~~~~~ In file included from /tmp/math/py-rpy/work/.buildlink/include/python3.10/Python.h:144:0, from ./rpy/rinterface/_rinterface.c:49: /tmp/math/py-rpy/work/.buildlink/include/python3.10/ceval.h:17:43: note: declared here Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./rpy/rinterface/_rinterface.c: In function 'Sexp_rcall': ./rpy/rinterface/_rinterface.c:1719:21: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types] argNameString = Rf_mkCharCE(PyBytes_AsString(pybytes), CE_UTF8); ^ ./rpy/rinterface/_rinterface.c:1720:32: warning: passing argument 1 of 'Rf_installTrChar' from incompatible pointer type [-Wincompatible-pointer-types] SET_TAG(c_R, installChar(argNameString)); ^~~~~~~~~~~~~ In file included from ./rpy/rinterface/_rinterface.h:9:0, from ./rpy/rinterface/_rinterface.c:52: /tmp/math/py-rpy/work/.buildlink/lib/R/include/Rinternals.h:1162:6: note: expected 'SEXP {aka struct SEXPREC *}' but argument is of type 'const char *' SEXP Rf_installTrChar(SEXP); ^~~~~~~~~~~~~~~~ gcc -pthread -shared -L. -Wl,-zrelro -Wl,-znow -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -Wl,-zrelro -Wl,-znow -L/usr/lib -Wl,-R/usr/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/X11R7/lib -Wl,-R/usr/X11R7/lib -L/usr/pkg/lib -Wl,-R/usr/pkg/lib -L/usr/lib -Wl,-R/usr/lib -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline build/temp.netbsd-9.0-amd64-3.10/./rpy/rinterface/_rinterface.o -L/usr/pkg/lib -L/usr/lib -L/usr/X11R7/lib -L/usr/pkg/lib/R/lib -L/usr/pkg/lib -L/usr/pkg/lib -Lbuild/temp.netbsd-9.0-amd64-3.10 -Wl,-R/usr/pkg/lib -Wl,-R/usr/lib -Wl,-R/usr/X11R7/lib -Wl,-R/usr/pkg/lib/R/lib -Wl,-R/usr/pkg/lib -lR -lpcre2-8 -llzma -lbz2 -lz -lrt -lm -liconv -lr_utils -o build/lib.netbsd-9.0-amd64-3.10/rpy2/rinterface/_rinterface.so -Wl,--export-dynamic -fopenmp -Wl,-R/usr/lib -Wl,-R/usr/pkg/lib -pthread -Wl,-R/usr/X11R7/lib -Wl,-R/usr/pkg/lib/R/lib -Wl,-R/usr/pkg/lib ld: warning: libgomp.so.1, needed by /tmp/math/py-rpy/work/.buildlink/lib/R/lib/libR.so, may conflict with libgomp.so.2 building 'rpy2.rinterface._rpy_device' extension gcc -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/pkg/include -O2 -fPIC -D_FORTIFY_SOURCE=2 -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/python3.10 -I/usr/include/readline -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I/usr/pkg/lib/R/include -Irpy/rinterface -I/usr/pkg/include/python3.10 -c ./rpy/rinterface/_rpy_device.c -o build/temp.netbsd-9.0-amd64-3.10/./rpy/rinterface/_rpy_device.o ./rpy/rinterface/_rpy_device.c: In function '_GrDev_close': ./rpy/rinterface/_rpy_device.c:146:5: error: lvalue required as increment operand ++Py_REFCNT(self); ^~ ./rpy/rinterface/_rpy_device.c:167:9: error: lvalue required as decrement operand if (--Py_REFCNT(self) != 0) { ^~ ./rpy/rinterface/_rpy_device.c:172:23: error: lvalue required as left operand of assignment Py_REFCNT(self) = refcnt; ^ ./rpy/rinterface/_rpy_device.c:175:7: error: '_Py_DEC_REFTOTAL' undeclared (first use in this function); did you mean '_Py_DECREF'? _Py_DEC_REFTOTAL; ^~~~~~~~~~~~~~~~ _Py_DECREF ./rpy/rinterface/_rpy_device.c:175:7: note: each undeclared identifier is reported only once for each function it appears in error: command '/tmp/math/py-rpy/work/.cwrapper/bin/gcc' failed with exit code 1 *** Error code 1 Stop. make[1]: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-rpy *** Error code 1 Stop. make: stopped in /amd/pkgsrc/CHROOT/P/pkgsrc/math/py-rpy