=> Bootstrap dependency digest>=20211023: found digest-20211023
WARNING: [license.mk] Every package should define a LICENSE.
=> Checksum BLAKE2s OK for xylem.1.8.7.tar.Z
=> Checksum SHA512 OK for xylem.1.8.7.tar.Z
===> Installing dependencies for xylem-1.8.7
=> Tool dependency checkperms>=1.1: found checkperms-1.12
=> Build dependency cwrappers>=20150314: found cwrappers-20180325
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Overriding tools for xylem-1.8.7
===> Extracting for xylem-1.8.7
===> Patching for xylem-1.8.7
=> Applying pkgsrc patches for xylem-1.8.7
=> Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/xylem/patches/patch-aa
=> Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/xylem/patches/patch-aa
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-aa,v 1.2 2005/11/03 19:52:44 rillig Exp $
|
|--- test/testxylem.csh.orig	2001-08-18 16:31:51.000000000 -0400
|+++ test/testxylem.csh	2003-09-28 17:29:21.000000000 -0400
--------------------------
Patching file test/testxylem.csh using Plan A...
Hunk #1 succeeded at 10.
Hunk #2 succeeded at 30.
Hunk #3 succeeded at 72.
Hunk #4 succeeded at 94.
Hunk #5 succeeded at 131.
Hunk #6 succeeded at 174.
Hunk #7 succeeded at 198.
Hunk #8 succeeded at 222.
Hunk #9 succeeded at 246.
Hunk #10 succeeded at 271.
Hunk #11 succeeded at 294.
Hunk #12 succeeded at 320.
Hunk #13 succeeded at 336.
Hunk #14 succeeded at 370.
Hunk #15 succeeded at 395.
done
=> Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/xylem/patches/patch-ab
=> Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/xylem/patches/patch-ab
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-ab,v 1.2 2005/11/03 19:52:44 rillig Exp $
|
|--- src.c/Makefile.orig	2000-08-17 12:17:18.000000000 -0400
|+++ src.c/Makefile	2003-09-28 17:05:26.000000000 -0400
--------------------------
Patching file src.c/Makefile using Plan A...
Hunk #1 succeeded at 6.
Hunk #2 succeeded at 22.
done
=> Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/biology/xylem/patches/patch-src.c_p2clib.c
=> Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/biology/xylem/patches/patch-src.c_p2clib.c
Hmm...  Looks like a unified diff to me...
The text leading up to this was:
--------------------------
|$NetBSD: patch-src.c_p2clib.c,v 1.1 2018/09/29 12:49:55 tnn Exp $
|
|Add explicit prototype.
|
|--- src.c/p2clib.c.orig	1996-05-03 16:31:13.000000000 +0000
|+++ src.c/p2clib.c
--------------------------
Patching file src.c/p2clib.c using Plan A...
Hunk #1 succeeded at 64.
done
===> Creating toolchain wrappers for xylem-1.8.7
===> Configuring for xylem-1.8.7
=> Checking for portability problems in extracted files
/bin/cp /tmp/biology/xylem/work/xylem/src.c/p2c.h.standard /tmp/biology/xylem/work/xylem/src.c/p2c.h