=> Bootstrap dependency digest>=20211023: found digest-20211023
WARNING: [license.mk] Every package should define a LICENSE.
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for xylem-1.8.7
gcc  -c  -O2 -fPIC -D_FORTIFY_SOURCE=2 p2clib.c
ar r libp2c.a p2clib.o; ranlib libp2c.a
ar: creating libp2c.a
gcc dbstat.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o dbstat
dbstat.c:244:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc getloc.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o getloc
getloc.c: In function 'FILEARGS':
getloc.c:187:7: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
       _EscIO2(FileNotFound, F->name);
       ^~~~~~~
       _EscIO
getloc.c: At top level:
getloc.c:941:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc getob.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o getob
In file included from getob.c:105:0:
getob.c: In function 'INITLIST':
./p2c.h:413:70: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 # define Malloc(n)  ((__MallocTemp__ = malloc(n)) ? __MallocTemp__ : (Anyptr)_OutMem())
                                                                      ^
getob.c:650:19: note: in expansion of macro 'Malloc'
   *HEAD = (NODE *)Malloc(sizeof(NODE));
                   ^~~~~~
./p2c.h:413:70: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 # define Malloc(n)  ((__MallocTemp__ = malloc(n)) ? __MallocTemp__ : (Anyptr)_OutMem())
                                                                      ^
getob.c:651:19: note: in expansion of macro 'Malloc'
   *TAIL = (NODE *)Malloc(sizeof(NODE));
                   ^~~~~~
getob.c: In function 'FILEARGS':
getob.c:891:7: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
       _EscIO2(FileNotFound, F->name);
       ^~~~~~~
       _EscIO
In file included from getob.c:105:0:
getob.c: In function 'ADDNODE':
./p2c.h:413:70: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 # define Malloc(n)  ((__MallocTemp__ = malloc(n)) ? __MallocTemp__ : (Anyptr)_OutMem())
                                                                      ^
getob.c:1233:23: note: in expansion of macro 'Malloc'
     NEWNODE = (NODE *)Malloc(sizeof(NODE));
                       ^~~~~~
getob.c: At top level:
getob.c:3677:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc identify.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o identify
identify.c: In function 'FILEARGS':
identify.c:89:7: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
       _EscIO2(FileNotFound, F->name);
       ^~~~~~~
       _EscIO
identify.c: At top level:
identify.c:274:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc prot2nuc.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o prot2nuc
prot2nuc.c:576:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc reform.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o reform
reform.c: In function 'FILEARGS':
reform.c:127:7: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
       _EscIO2(FileNotFound, F->name);
       ^~~~~~~
       _EscIO
reform.c: At top level:
reform.c:740:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc ribosome.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o ribosome
ribosome.c: In function 'FILEARGS':
ribosome.c:104:7: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
       _EscIO2(FileNotFound, F->name);
       ^~~~~~~
       _EscIO
ribosome.c: At top level:
ribosome.c:901:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc splitdb.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o splitdb
splitdb.c: In function 'FILEARGS':
splitdb.c:376:7: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
       _EscIO2(FileNotFound, F->name);
       ^~~~~~~
       _EscIO
splitdb.c: At top level:
splitdb.c:842:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc shuffle.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o shuffle
shuffle.c: In function 'SCRAMBLE':
shuffle.c:556:5: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
     _EscIO2(FileNotFound, SEQFILE->name);
     ^~~~~~~
     _EscIO
shuffle.c: At top level:
shuffle.c:587:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc flat2phyl.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o flat2phyl
flat2phyl.c:328:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
gcc phyl2flat.c -O  -L. -lp2c -lm -I. -O2 -fPIC -D_FORTIFY_SOURCE=2 -o phyl2flat
phyl2flat.c: In function 'NAMESANDSEQ':
phyl2flat.c:195:5: warning: implicit declaration of function '_EscIO2'; did you mean '_EscIO'? [-Wimplicit-function-declaration]
     _EscIO2(FileNotFound, F->name);
     ^~~~~~~
     _EscIO
phyl2flat.c: At top level:
phyl2flat.c:328:1: warning: return type defaults to 'int' [-Wimplicit-int]
 main(argc, argv)
 ^~~~
/bin/rm -f /tmp/biology/xylem/work/xylem/test/testxylem.csh.orig
mv -f /tmp/biology/xylem/work/xylem/src.c/identify /tmp/biology/xylem/work/xylem/src.c/xyl-identify
mv -f /tmp/biology/xylem/work/xylem/src.c/shuffle /tmp/biology/xylem/work/xylem/src.c/xyl-shuffle