=> Bootstrap dependency digest>=20211023: found digest-20211023 WARNING: [license.mk] Every package should define a LICENSE. ===> Skipping vulnerability checks. WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'. ===> Building for pdbalign-20030812 --- pdbalign.o --- --- distalign.o --- --- pdbdist.o --- --- distalign.o --- gcc -O2 -fPIC -D_FORTIFY_SOURCE=2 -c -o distalign.o distalign.c --- pdbalign.o --- gcc -O2 -fPIC -D_FORTIFY_SOURCE=2 -c -o pdbalign.o pdbalign.c --- pdbdist.o --- gcc -O2 -fPIC -D_FORTIFY_SOURCE=2 -c -o pdbdist.o pdbdist.c --- distalign.o --- distalign.c: In function 'ParseMSFFile': distalign.c:110:9: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit(1); ^~~~ distalign.c:110:9: warning: incompatible implicit declaration of built-in function 'exit' distalign.c:110:9: note: include '' or provide a declaration of 'exit' distalign.c:129:31: warning: implicit declaration of function 'malloc' [-Wimplicit-function-declaration] { if( !(ptr=(SeqRecord*)malloc(sizeof(SeqRecord))) ) ^~~~~~ distalign.c:129:31: warning: incompatible implicit declaration of built-in function 'malloc' distalign.c:129:31: note: include '' or provide a declaration of 'malloc' distalign.c:131:13: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:131:13: note: include '' or provide a declaration of 'exit' distalign.c:19:19: warning: incompatible implicit declaration of built-in function 'malloc' #define _fmalloc malloc ^ distalign.c:164:39: note: in expansion of macro '_fmalloc' if( !(ptr->seq = (char __far*)_fmalloc(alignlen)) ) ^~~~~~~~ distalign.c:19:19: note: include '' or provide a declaration of 'malloc' #define _fmalloc malloc ^ distalign.c:164:39: note: in expansion of macro '_fmalloc' if( !(ptr->seq = (char __far*)_fmalloc(alignlen)) ) ^~~~~~~~ distalign.c:166:13: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:166:13: note: include '' or provide a declaration of 'exit' distalign.c:178:65: warning: incompatible implicit declaration of built-in function 'exit' { fputs("Error: No alignment sequences found!\n",stderr); exit(1); ^~~~ distalign.c:178:65: note: include '' or provide a declaration of 'exit' distalign.c: In function 'ParsePDBFile': distalign.c:360:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:360:9: note: include '' or provide a declaration of 'exit' distalign.c:19:19: warning: incompatible implicit declaration of built-in function 'malloc' #define _fmalloc malloc ^ distalign.c:363:26: note: in expansion of macro '_fmalloc' Offset = (int __far*)_fmalloc(alignlen*sizeof(int)); ^~~~~~~~ distalign.c:19:19: note: include '' or provide a declaration of 'malloc' #define _fmalloc malloc ^ distalign.c:363:26: note: in expansion of macro '_fmalloc' Offset = (int __far*)_fmalloc(alignlen*sizeof(int)); ^~~~~~~~ distalign.c:368:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:368:9: note: include '' or provide a declaration of 'exit' distalign.c:407:21: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:407:21: note: include '' or provide a declaration of 'exit' distalign.c: In function 'CreateDistanceSequence': distalign.c:514:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr=(SeqRecord*)malloc(sizeof(SeqRecord))) ) ^~~~~~ distalign.c:514:27: note: include '' or provide a declaration of 'malloc' distalign.c:516:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:516:9: note: include '' or provide a declaration of 'exit' distalign.c:524:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr->seq=(char*)malloc(alignlen)) ) ^~~~~~ distalign.c:524:27: note: include '' or provide a declaration of 'malloc' distalign.c:526:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:526:9: note: include '' or provide a declaration of 'exit' distalign.c: In function 'CreateEntropySequence': distalign.c:766:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr=(SeqRecord*)malloc(sizeof(SeqRecord))) ) ^~~~~~ distalign.c:766:27: note: include '' or provide a declaration of 'malloc' distalign.c:768:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:768:9: note: include '' or provide a declaration of 'exit' distalign.c:776:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr->seq=(char*)malloc(alignlen)) ) ^~~~~~ distalign.c:776:27: note: include '' or provide a declaration of 'malloc' distalign.c:778:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:778:9: note: include '' or provide a declaration of 'exit' distalign.c: In function 'CreatePairwiseSequence': distalign.c:798:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr=(SeqRecord*)malloc(sizeof(SeqRecord))) ) ^~~~~~ distalign.c:798:27: note: include '' or provide a declaration of 'malloc' distalign.c:800:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:800:9: note: include '' or provide a declaration of 'exit' distalign.c:808:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr->seq=(char*)malloc(alignlen)) ) ^~~~~~ distalign.c:808:27: note: include '' or provide a declaration of 'malloc' distalign.c:810:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:810:9: note: include '' or provide a declaration of 'exit' distalign.c: In function 'CreateZvelebilSequence': distalign.c:831:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr=(SeqRecord*)malloc(sizeof(SeqRecord))) ) ^~~~~~ distalign.c:831:27: note: include '' or provide a declaration of 'malloc' distalign.c:833:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:833:9: note: include '' or provide a declaration of 'exit' distalign.c:841:27: warning: incompatible implicit declaration of built-in function 'malloc' if( !(ptr->seq=(char*)malloc(alignlen)) ) ^~~~~~ distalign.c:841:27: note: include '' or provide a declaration of 'malloc' distalign.c:843:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:843:9: note: include '' or provide a declaration of 'exit' distalign.c: In function 'WriteMSFFile': distalign.c:870:13: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:870:13: note: include '' or provide a declaration of 'exit' distalign.c: In function 'DisplayUsage': distalign.c:937:5: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:937:5: note: include '' or provide a declaration of 'exit' --- pdbdist.o --- pdbdist.c: In function 'ReadPDBFloat': pdbdist.c:93:14: warning: type of 'begin' defaults to 'int' [-Wimplicit-int] static float ReadPDBFloat( begin, len ) ^~~~~~~~~~~~ pdbdist.c:93:14: warning: type of 'len' defaults to 'int' [-Wimplicit-int] pdbdist.c: In function 'ReadPDBInteger': pdbdist.c:108:12: warning: type of 'begin' defaults to 'int' [-Wimplicit-int] static int ReadPDBInteger( begin, len ) ^~~~~~~~~~~~~~ pdbdist.c:108:12: warning: type of 'len' defaults to 'int' [-Wimplicit-int] --- distalign.o --- distalign.c: In function 'main': distalign.c:998:9: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ distalign.c:998:9: note: include '' or provide a declaration of 'exit' distalign.c:1019:5: warning: incompatible implicit declaration of built-in function 'exit' exit(0); ^~~~ distalign.c:1019:5: note: include '' or provide a declaration of 'exit' --- pdbdist --- gcc -lm -o pdbdist pdbdist.o --- pdbalign --- gcc -lm -o pdbalign pdbalign.o --- distalign --- gcc -lm -o distalign distalign.o