=> Bootstrap dependency digest>=20211023: found digest-20211023
WARNING: [license.mk] Every package should define a LICENSE.
===> Skipping vulnerability checks.
WARNING: No /usr/pkg/pkgdb/pkg-vulnerabilities file found.
WARNING: To fix run: `/usr/sbin/pkg_admin -K /usr/pkg/pkgdb fetch-pkg-vulnerabilities'.
===> Building for glimmer-2.13nb1
--- adjust.o ---
--- delcher.o ---
--- anomaly.o ---
--- gene.o ---
--- adjust.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c adjust.cc -o adjust.o
--- delcher.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c delcher.cc -o delcher.o
--- anomaly.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c anomaly.cc -o anomaly.o
--- gene.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c gene.cc -o gene.o
gene.cc: In function 'char* Subscript_To_Codon(int)':
gene.cc:505:23: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
    char  * alphabet = "acgt";
                       ^~~~~~
--- build-icm.o ---
--- misc.o ---
--- build-icm.o ---
gcc -O2 -fPIC -D_FORTIFY_SOURCE=2 -c build-icm.c -o build-icm.o
--- misc.o ---
gcc -O2 -fPIC -D_FORTIFY_SOURCE=2 -c misc.c -o misc.o
--- check.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c check.cc -o check.o
--- codon-usage.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c codon-usage.cc -o codon-usage.o
--- compare-lists.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c compare-lists.cc -o compare-lists.o
--- extract.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c extract.cc -o extract.o
--- generate.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c generate.cc -o generate.o
--- get-len.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c get-len.cc -o get-len.o
--- get-putative.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c get-putative.cc -o get-putative.o
--- glimmer2.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c glimmer2.cc -o glimmer2.o
--- generate.o ---
generate.cc: In function 'int main(int, char**)':
generate.cc:117:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         prob = Partial_Window_Prob_Dist ("a", 1, MODEL [0]);
                                                           ^
generate.cc:121:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         prob = Partial_Window_Prob_Dist ("a", 1, MODEL [1]);
                                                           ^
generate.cc:125:59: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings]
         prob = Partial_Window_Prob_Dist ("a", 1, MODEL [2]);
                                                           ^
--- rnabin.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c rnabin.cc -o rnabin.o
--- long-orfs.o ---
c++ -O2 -fPIC -D_FORTIFY_SOURCE=2 -c long-orfs.cc -o long-orfs.o
--- adjust ---
c++ -o ./adjust adjust.o delcher.o -lm
--- anomaly ---
c++ -o ./anomaly anomaly.o delcher.o gene.o -lm
--- build-icm ---
gcc -o ./build-icm build-icm.o misc.o -lm
--- codon-usage ---
c++ -o ./codon-usage codon-usage.o delcher.o gene.o -lm
--- check ---
c++ -o ./check check.o delcher.o -lm
--- compare-lists ---
c++ -o ./compare-lists compare-lists.o delcher.o -lm
--- extract ---
c++ -o ./extract extract.o delcher.o -lm
--- get-len ---
c++ -o ./get-len get-len.o delcher.o -lm
--- get-putative ---
c++ -o ./get-putative get-putative.o delcher.o -lm
--- generate ---
c++ -o ./generate generate.o delcher.o gene.o -lm
--- long-orfs ---
c++ -o ./long-orfs long-orfs.o delcher.o gene.o -lm
--- glimmer2 ---
c++ -o ./glimmer2 glimmer2.o delcher.o gene.o rnabin.o -lm