=> Bootstrap dependency digest>=20010302: found digest-20190127 ===> Skipping vulnerability checks. WARNING: No /var/db/pkg/pkg-vulnerabilities file found. WARNING: To fix run: `/usr/sbin/pkg_admin -K /var/db/pkg fetch-pkg-vulnerabilities'. => Checksum SHA1 OK for R-3.6.0.tar.gz => Checksum RMD160 OK for R-3.6.0.tar.gz => Checksum SHA512 OK for R-3.6.0.tar.gz ===> Installing dependencies for R-3.6.0 ========================================================================== The following variables will affect the build process of this package, R-3.6.0. Their current value is shown below: * JPEG_DEFAULT = jpeg * KRB5_DEFAULT = heimdal * SSLBASE = /usr * SSLCERTS = /etc/openssl/certs * SSLDIR = /etc/openssl * SSLKEYS = /etc/openssl/private Based on these variables, the following variables have been set: * JPEGBASE (defined, but empty) * JPEG_TYPE = jpeg * KRB5BASE (defined, but empty) * KRB5_TYPE = heimdal * TERMCAP_TYPE = termcap You may want to abort the process now with CTRL-C and change their value before continuing. Be sure to run `/usr/bin/make clean' after the changes. ========================================================================== => Tool dependency glib2-tools-[0-9]*: found glib2-tools-2.60.4 => Tool dependency libtool-base>=2.4.2nb9: found libtool-base-2.4.6nb2 => Tool dependency automake>=1.9: found automake-1.16.1 => Tool dependency autoconf>=2.58: found autoconf-2.69nb8 => Tool dependency gmake>=3.81: found gmake-4.2.1nb1 => Tool dependency imake-[0-9]*: found imake-1.0.8 => Tool dependency gtexinfo>=5.1: found gtexinfo-6.5nb3 => Tool dependency pkgconf-[0-9]*: found pkgconf-1.6.0 => Tool dependency checkperms>=1.1: found checkperms-1.12 => Build dependency libtool-fortran>=2.4.2nb9: found libtool-fortran-2.4.6nb1 => Build dependency x11-links>=1.19: found x11-links-1.19 => Build dependency cwrappers>=20150314: found cwrappers-20180325 => Full dependency perl>=5.0: found perl-5.28.2 => Full dependency libiconv>=1.9.1nb4: found libiconv-1.14nb3 => Full dependency gettext-lib>=0.18: found gettext-lib-0.20.1 => Full dependency glib2>=2.34.0: found glib2-2.60.4nb1 => Full dependency pcre>=8.30nb1: found pcre-8.43 => Full dependency pango>=1.42.4nb2: found pango-1.42.4nb4 => Full dependency cairo>=1.16.0: found cairo-1.16.0 => Full dependency png>=1.6.0nb1: found png-1.6.37 => Full dependency readline>=6.0: found readline-8.0 => Full dependency jpeg>=9: found jpeg-9cnb1 => Full dependency tiff>=4.0.3nb5: found tiff-4.0.10 => Full dependency blas>=1.0nb3: found blas-3.7.1nb1 => Full dependency lapack>=3.1.1: found lapack-3.7.1nb1 => Full dependency curl>=7.63.0nb1: found curl-7.65.1 => Full dependency tk>=8.6.8nb1: found tk-8.6.9 => Full dependency g95>=0.91: found g95-0.93nb11 ===> Overriding tools for R-3.6.0 ===> Extracting for R-3.6.0 ===> Patching for R-3.6.0 => Applying pkgsrc patches for R-3.6.0 => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-configure.ac => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-configure.ac Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-configure.ac,v 1.4 2019/06/09 13:39:12 wen Exp $ | |Do not include system paths in R_LD_LIBRARY_PATH. |NetBSD, FreeBSD, DragonFly, Darwin and Solaris fixes | |--- configure.ac.orig 2019-06-08 08:57:35.738653089 +0000 |+++ configure.ac -------------------------- Patching file configure.ac using Plan A... Hunk #1 succeeded at 33. Hunk #2 succeeded at 291. Hunk #3 succeeded at 710. Hunk #4 succeeded at 1277. Hunk #5 succeeded at 1366. Hunk #6 succeeded at 1408. Hunk #7 succeeded at 1502. Hunk #8 succeeded at 1562. Hunk #9 succeeded at 2491. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-m4_R.m4 => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-m4_R.m4 Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-m4_R.m4,v 1.1 2017/10/06 20:47:37 rumko Exp $ | |Ensure tests for clog & co. fail, not just emit warning | |--- m4/R.m4.orig 2017-01-05 23:15:05.000000000 +0000 |+++ m4/R.m4 -------------------------- Patching file m4/R.m4 using Plan A... Hunk #1 succeeded at 230 (offset 4 lines). Hunk #2 succeeded at 900 (offset -115 lines). Hunk #3 succeeded at 1114 (offset 4 lines). Hunk #4 succeeded at 3554 (offset -91 lines). done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-m4_cairo.m4 => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-m4_cairo.m4 Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-m4_cairo.m4,v 1.1 2017/10/18 16:14:30 adam Exp $ | |Detect cairo with any backend (not only X11). | |--- m4/cairo.m4.orig 2017-10-18 15:50:34.000000000 +0000 |+++ m4/cairo.m4 -------------------------- Patching file m4/cairo.m4 using Plan A... Hunk #1 succeeded at 70. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-src_library_stats_src_Makefile.in => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-src_library_stats_src_Makefile.in Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_library_stats_src_Makefile.in,v 1.2 2016/07/26 04:53:33 wen Exp $ | |${R_INCLUDE_DIR} is used in the default compiler flags. | |--- src/library/stats/src/Makefile.in.orig 2016-07-26 01:57:49.000000000 +0000 |+++ src/library/stats/src/Makefile.in -------------------------- Patching file src/library/stats/src/Makefile.in using Plan A... Hunk #1 succeeded at 10. done => Verifying /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-src_main_character.c => Applying pkgsrc patch /amd/pkgsrc/CHROOT/P/pkgsrc/math/R/patches/patch-src_main_character.c Hmm... Looks like a unified diff to me... The text leading up to this was: -------------------------- |$NetBSD: patch-src_main_character.c,v 1.4 2019/06/09 13:39:12 wen Exp $ | |--- src/main/character.c.orig 2019-06-08 09:21:28.671757451 +0000 |+++ src/main/character.c -------------------------- Patching file src/main/character.c using Plan A... Hunk #1 succeeded at 1601. Hunk #2 succeeded at 1634. done ===> Creating toolchain wrappers for R-3.6.0 ===> Configuring for R-3.6.0 autoreconf: Entering directory `.' autoreconf: configure.ac: not using Gettext autoreconf: running: aclocal --force configure.ac:1599: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2108: warning: macro 'AM_NLS' not found in library configure.ac:2112: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2113: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: configure.ac: tracing autoreconf: configure.ac: AM_GNU_GETTEXT is used, but not AM_GNU_GETTEXT_VERSION autoreconf: running: libtoolize --copy --force libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'tools'. libtoolize: copying file 'tools/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:1599: warning: macro 'AM_LANGINFO_CODESET' not found in library configure.ac:2108: warning: macro 'AM_NLS' not found in library configure.ac:2112: warning: macro 'AM_GNU_GETTEXT_VERSION' not found in library configure.ac:2113: warning: macro 'AM_GNU_GETTEXT' not found in library autoreconf: running: /usr/pkg/bin/autoconf --force autoreconf: running: /usr/pkg/bin/autoheader --force autoreconf: configure.ac: not using Automake autoreconf: Leaving directory `.' => Generating pkg-config files for builtin xz package. => Generating pkg-config file for builtin expat package. => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files configure: WARNING: unrecognized options: --without-gnome, --with-system-zlib, --with-system-bzlib, --with-system-pcre, --with-system-xz, --without-atlas, --without-blas_risc, --without-dxml, --without-libmoto, --with-libiconv-prefix checking build system type... x86_64--netbsd checking host system type... x86_64--netbsd loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c -o makoto -g users checking for sed... /usr/bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for /bin/tar... /bin/tar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... 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exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... no checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... no checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking whether mktime sets errno... no checking whether mktime works correctly outside 1902-2037... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... no checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -ldgemm... no checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no checking for dgemm_ in -lblas... (cached) yes checking whether double complex BLAS can be used... yes checking whether the BLAS is complete... (cached) yes checking for dpstrf_... no checking for dpstrf_ in -llapack... yes checking iconv.h usability... yes checking iconv.h presence... yes checking for iconv.h... yes checking for iconv... in libiconv checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes checking whether iconv accepts "CP1252"... yes checking for iconvlist... yes checking for iconv... yes checking for iconv declaration... extern size_t iconv (iconv_t cd, const char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking wctype.h usability... yes checking wctype.h presence... yes checking for wctype.h... yes checking whether mbrtowc exists and is declared... yes checking whether wcrtomb exists and is declared... yes checking whether wcscoll exists and is declared... yes checking whether wcsftime exists and is declared... yes checking whether wcstod exists and is declared... yes checking whether mbstowcs exists and is declared... yes checking whether wcstombs exists and is declared... yes checking whether wctrans exists and is declared... yes checking whether iswblank exists and is declared... yes checking whether wctype exists and is declared... yes checking whether iswctype exists and is declared... yes checking for wctrans_t... yes checking for mbstate_t... yes checking for ICU... no checking for X... libraries /usr/X11R7/lib, headers /usr/X11R7/include checking whether -R must be followed by a space... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... yes checking X11/Intrinsic.h usability... yes checking X11/Intrinsic.h presence... yes checking for X11/Intrinsic.h... yes checking for XtToolkitInitialize in -lXt... yes using X11 ... yes checking for KeySym... yes checking X11/Xmu/Atoms.h usability... yes checking X11/Xmu/Atoms.h presence... yes checking for X11/Xmu/Atoms.h... yes checking for XmuInternAtom in -lXmu... yes checking whether pkg-config knows about cairo and pango... yes checking whether cairo including pango is >= 1.2 and works... yes checking for /usr/pkg/lib/tclConfig.sh... /usr/pkg/lib/tclConfig.sh checking for /usr/pkg/lib/tkConfig.sh... /usr/pkg/lib/tkConfig.sh checking tcl.h usability... yes checking tcl.h presence... yes checking for tcl.h... yes checking tk.h usability... yes checking tk.h presence... yes checking for tk.h... yes checking whether compiling/linking Tcl/Tk code works... yes checking for BSD networking... yes checking rpc/types.h usability... yes checking rpc/types.h presence... yes checking for rpc/types.h... yes checking for rpc/xdr.h... yes checking for XDR support... yes checking for inflateInit2_ in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.2.5... (cached) yes checking whether zlib support suffices... yes checking mmap support for zlib... yes checking for BZ2_bzlibVersion in -lbz2... yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking if bzip2 version >= 1.0.6... (cached) yes checking whether bzip2 support suffices... yes checking for lzma_version_number in -llzma... yes checking lzma.h usability... yes checking lzma.h presence... yes checking for lzma.h... yes checking if lzma version >= 5.0.3... yes checking for pcre_fullinfo in -lpcre... yes checking pcre.h usability... yes checking pcre.h presence... yes checking for pcre.h... yes checking pcre/pcre.h usability... no checking pcre/pcre.h presence... no checking for pcre/pcre.h... no checking if PCRE version >= 8.20, < 10.0 and has UTF-8 support... yes checking if PCRE version >= 8.32... yes checking whether PCRE support suffices... yes checking for pcre2-config... no checking for curl-config... /usr/pkg/bin/curl-config checking libcurl version ... 7.65.1 checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes checking if libcurl is version 7 and >= 7.22.0... yes checking if libcurl supports https... yes checking if jpeglib version >= 6b... yes checking for jpeg_destroy_compress in -ljpeg... yes checking if libpng version >= 1.2.7... yes checking for png_create_write_struct in -lpng... yes checking tiffio.h usability... yes checking tiffio.h presence... yes checking for tiffio.h... yes checking for TIFFOpen in -ltiff... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for sys/time.h... (cached) yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for _LARGEFILE_SOURCE value needed for large files... no checking whether KERN_USRSTACK sysctl is supported... no checking for lpr... lpr checking for paperconf... false checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for g95 option to support OpenMP... (cached) unsupported checking for recommended packages... yes checking whether NLS is requested... yes Configuring src/extra/intl directory checking for a thread-safe mkdir -p... tools/install-sh -c -d checking whether we are using the GNU C Library 2 or newer... no checking for x86_64--netbsd-ranlib... ranlib checking for simple visibility declarations... yes checking for stdint.h... yes checking for getpagesize... yes checking for working mmap... yes checking whether integer division by zero raises SIGFPE... yes checking for inttypes.h... yes checking for unsigned long long int... yes checking for inttypes.h... (cached) yes checking whether the inttypes.h PRIxNN macros are broken... no checking for ld used by gcc... ld checking if the linker (ld) is GNU ld... yes checking for shared library run path origin... done checking whether imported symbols can be declared weak... yes checking for multithread API to use... none checking argz.h usability... no checking argz.h presence... no checking for argz.h... no checking for inttypes.h... (cached) yes checking for limits.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... (cached) yes checking for getcwd... yes checking for getegid... yes checking for geteuid... yes checking for getgid... yes checking for getuid... yes checking for mempcpy... (cached) no checking for munmap... yes checking for stpcpy... yes checking for strcasecmp... yes checking for strdup... (cached) yes checking for strtoul... yes checking for tsearch... yes checking for argz_count... no checking for argz_stringify... no checking for argz_next... no checking for __fsetlocking... no checking whether feof_unlocked is declared... no checking whether fgets_unlocked is declared... no checking for iconv... (cached) yes checking for iconv declaration... (cached) extern size_t iconv (iconv_t cd, const char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for NL_LOCALE_NAME macro... no checking for bison... no checking for long long int... yes checking for long double... yes checking for wchar_t... yes checking for wint_t... yes checking for intmax_t... yes checking whether printf() supports POSIX/XSI format strings... yes checking whether we are using the GNU C Library 2.1 or newer... no checking for stdint.h... (cached) yes checking for SIZE_MAX... yes checking for stdint.h... (cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... no checking for GNU gettext in libintl... (cached) yes checking whether to use NLS... yes checking where the gettext function comes from... external libintl checking how to link with libintl... /usr/pkg/lib/libintl.so -Wl,-rpath -Wl,/usr/pkg/lib Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands rm: libtoolT: No such file or directory config.status: executing stamp-h commands configure: WARNING: unrecognized options: --without-gnome, --with-system-zlib, --with-system-bzlib, --with-system-pcre, --with-system-xz, --without-atlas, --without-blas_risc, --without-dxml, --without-libmoto, --with-libiconv-prefix R is now configured for x86_64--netbsd Source directory: . Installation directory: /usr/pkg C compiler: gcc -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/X11R7/include/libdrm -I/usr/include/krb5 Fortran fixed-form compiler: g95 -O Default C++ compiler: c++ -std=gnu++11 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/X11R7/include/libdrm -I/usr/include/krb5 C++98 compiler: c++ -std=gnu++98 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/X11R7/include/libdrm -I/usr/include/krb5 C++11 compiler: c++ -std=gnu++11 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/X11R7/include/libdrm -I/usr/include/krb5 C++14 compiler: c++ -std=gnu++14 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/X11R7/include/libdrm -I/usr/include/krb5 C++17 compiler: c++ -std=gnu++17 -O2 -D_FORTIFY_SOURCE=2 -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/glib-2.0 -I/usr/pkg/include/gio-unix-2.0 -I/usr/pkg/lib/glib-2.0/include -I/usr/X11R7/include -I/usr/X11R7/include/freetype2 -I/usr/X11R7/include/libdrm -I/usr/include/krb5 Fortran free-form compiler: g95 -O Obj-C compiler: gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo Options enabled: shared R library, R profiling Capabilities skipped: ICU Options not enabled: shared BLAS, memory profiling Recommended packages: yes configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: I could not determine a browser configure: WARNING: I could not determine a PDF viewer => Modifying libtool scripts to use pkgsrc libtool => Modifying libtool scripts to use pkgsrc depcomp